Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00788 ATGGATTTTGTCCAGATCTTGTGGATTTCTGAAGTTACCTTCTTGACATTGGAGACAATGGTGGTGAATTTCCAACACACTTTTCTTGTGTTCTTGGCGATTCTTGTTGTTGGGAAGGCAGAAATTTACATTGTCACTATTGAAGGAGAACCGATTGTAAGTTACAAGGGTGATCTGGATGGGTTTGAAGCTACAGCAATGGAATCTGATGAAAAGATCGACCCTACCAGTGAAATTGTGACATCCTATGCTCGTCACCTCGAAAATAAACATGACATGCTTCTTGGGATGTTGTTTGAGAGAGGATCCTTCAAGAAGCTCTATAGTTATAAGCATCTCATCAATGGATTTGCTGTTGACATCACCCATGAACAGGCAGAGATTCTAAGACATACACCAATTGTAAAATCTGTTGAGAGGGACTGGAAGGTTAGAAAACTAACAACACACACTCCAGAGTTTTTGGGCCTTCCAACTGGCGTATGGCCAACCGGTGGTGGCTTTGACAGGGCTGGAGAAGACATTGTGATTGGATTTGTGGACTCTGGGATTTCTCCACACCATCCAAGTTTTGCAACATATAATACCGAGCCTTTTGGGCCGTGTTTGAAGTATAAAGGGAAATGCGAAATTGACCCTGACACTAAGAAGGATTTCTGTAATGGAAAGATTGTTGGAGCCCAACATTTTGCAGAAGCTGCTAAAGCAGCTGGGGCATTTAATCCAGCTATTCATTTTGCATCTCCTTTGGATGGTGATGGACATGGAAGCCATACAGCAGCAATTGCAGCTGGAAATAATGGAATCCCTGTGAGAATGCATGGCTATGAATTTGGTAAAGCAAGTGGGATGGCTCCCCGTGCTAGAATTGCTGTATATAAAGCTCTCTACAGAATATTTGGAGGATTTGTTGCTGATGTAGTTGCAGCCATTGATCAGGCTGTACATGATGGGGTCGATATTCTCAGTCTTTCAGTGGGGCCAAATAGTCCTCCTGCAACTACCAAGATCACATATTTAAACCCTTTTGATGCGACCCTTCTTTCAGCTGTGAAGGCTGGTGTATTTGTCGCACAGGCTGCGGGCAATGGAGGTCCATTTCCTAAAACTTTGGTGTCATATAGTCCATGGATAGCAACTGTGGCAGCTGCAATTGATGACAGAAGATACAAAAACCATCTGACACTTGGTAATGGAAAAATTTTGGCTGGACTTGGGTTATCACCTGCTACACATTTAAATCGAACATACACATTGGTCGCAGCTAATGACGTTTTGTTAGATTCTTCGGTAACGAAGTACAGCCCTTCAGACTGCCAAAAGCCAGAAGTTCTAAACAAACGCTTGGTTGAAGGAAAAGTACTTCTTTGTGGTTATTCATTCAGTTTTGTTGTTGGTACCGCTTCAATCAAGAAGGTCTCTCAAACAGCAAAATCCCTTGGGGCAGCTGGCTTTGTTCTTGCTGTTGAAAACATATCTCCGGGAGCAAAATTTGACCCTGTTCCTGTTGGCATTCCTGGAATTCTTATAACTGATGTCAGCAAGTCGATGGATCTTATAGACTACTACAACACCTCTACACCCAGAGACTGGACGGGTCGGGTCAAGAGCTTTGATGCTGTGGGTAGCATTGGGGATGGTTTGATGCCTTTATTATACAAATCAGCTCCTGAGGTAGCATTGTTTTCTGCTCGTGGGCCCAATATTAGAGATTTTAGCTTTCAGGATGCAGACCTTCTCAAACCAGATATTCTAGCTCCTGGTTCTTTGATTTGGGCTGCTTGGTCTCCAAATGGAACGGACGAGCCAAACTATGTTGGAGAGGGATTTGCTATGATTTCTGGAACTAGCATGGCAGCACCACATATAGCTGGTATAGCAGCTCTTGTAAAACAGAAGCATCCTAATTGGAGTCCTGCAGCCATCAAATCGGCTTTAATGACAACATCAACAACAATGGACAGAGGAGGAAGACCTCTTAAAGCACAACAATTTTCTGAAACAGAAGCCATGAAATTGGTATCTGCAACACCTTTTGATTATGGGAGTGGTCATGTAAACCCAAGAGCAGCATTGGATCCGGGACTCATCTTTGATGCAGGTTATGAAGATTACTTGGGATTTTTGTGCACAACGGCGGGCATCAACGTTCATGAGATACATAACTATACAAACTCACCTTGCAACTTCACCATGGGGCATCCCTGGAATCTCAACAGCCCATCAATCACCATCGCCCATCTCGTGGGAAGTCAAACCGTTACTCGCACAGTAATAAATGTTGCTGAAGAAGAAACCTATACAATTACTGCAAGAATGGACCCTGCTGTTGCCATAGAAGTGAATCCTCCAGCAATGACTTTACGATCTGGTTCATCGAGAAAATTTTCGGTAACTCTCACAGCTCGATCACTGACAGGAACATATAGTTTCGGCCAGGTTCTATTGAAGGGCAGTAGAGGACACAAGGTTAGAATACCTGTAGTAGCCATGGGATACCAACGATGA 2508 43.5 MDFVQILWISEVTFLTLETMVVNFQHTFLVFLAILVVGKAEIYIVTIEGEPIVSYKGDLDGFEATAMESDEKIDPTSEIVTSYARHLENKHDMLLGMLFERGSFKKLYSYKHLINGFAVDITHEQAEILRHTPIVKSVERDWKVRKLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGISPHHPSFATYNTEPFGPCLKYKGKCEIDPDTKKDFCNGKIVGAQHFAEAAKAAGAFNPAIHFASPLDGDGHGSHTAAIAAGNNGIPVRMHGYEFGKASGMAPRARIAVYKALYRIFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKITYLNPFDATLLSAVKAGVFVAQAAGNGGPFPKTLVSYSPWIATVAAAIDDRRYKNHLTLGNGKILAGLGLSPATHLNRTYTLVAANDVLLDSSVTKYSPSDCQKPEVLNKRLVEGKVLLCGYSFSFVVGTASIKKVSQTAKSLGAAGFVLAVENISPGAKFDPVPVGIPGILITDVSKSMDLIDYYNTSTPRDWTGRVKSFDAVGSIGDGLMPLLYKSAPEVALFSARGPNIRDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMISGTSMAAPHIAGIAALVKQKHPNWSPAAIKSALMTTSTTMDRGGRPLKAQQFSETEAMKLVSATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTAGINVHEIHNYTNSPCNFTMGHPWNLNSPSITIAHLVGSQTVTRTVINVAEEETYTITARMDPAVAIEVNPPAMTLRSGSSRKFSVTLTARSLTGTYSFGQVLLKGSRGHKVRIPVVAMGYQR 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9148837 9155917 - Lsi11G007880.1 Lsi11g00788 673955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00788 835 CDD Peptidases_S8_3 148 651 IPR034197 -
Lsi11g00788 835 Pfam Fibronectin type-III domain 737 829 IPR041469 -
Lsi11g00788 835 SUPERFAMILY Protease propeptides/inhibitors 104 145 - -
Lsi11g00788 835 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 38 147 IPR037045 -
Lsi11g00788 835 Gene3D - 709 832 - -
Lsi11g00788 835 ProSitePatterns Serine proteases, subtilase family, serine active site. 615 625 IPR023828 -
Lsi11g00788 835 ProSiteProfiles Serine proteases, subtilase domain profile. 141 692 - -
Lsi11g00788 835 SUPERFAMILY Subtilisin-like 147 696 IPR036852 GO:0004252|GO:0006508
Lsi11g00788 835 Pfam Subtilase family 172 653 IPR000209 GO:0006508|GO:0008236
Lsi11g00788 835 Gene3D Peptidase S8/S53 domain 174 705 IPR036852 GO:0004252|GO:0006508
Lsi11g00788 835 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 177 188 IPR023827 -
Lsi11g00788 835 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 834 IPR045051 -
Lsi11g00788 835 PANTHER CUCUMISIN-RELATED 32 834 - -
Lsi11g00788 835 Pfam Peptidase inhibitor I9 43 145 IPR010259 -
Lsi11g00788 835 PRINTS Subtilisin serine protease family (S8) signature 614 630 IPR015500 -
Lsi11g00788 835 PRINTS Subtilisin serine protease family (S8) signature 172 191 IPR015500 -
Lsi11g00788 835 PRINTS Subtilisin serine protease family (S8) signature 251 264 IPR015500 -
Lsi11g00788 835 Gene3D - 387 552 - -
Lsi11g00788 835 CDD PA_subtilisin_like 394 532 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01226 Lsi11g00788 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01071 Lsi-Chr2:11826376 Lsi11g00788 Lsi-Chr11:9148837 1.56E-172 dispersed
Lsi07g00711 Lsi-Chr7:7629485 Lsi11g00788 Lsi-Chr11:9148837 5.80E-06 dispersed
Lsi11g00788 Lsi-Chr11:9148837 Lsi08g01515 Lsi-Chr8:23224529 1.81E-107 dispersed
Lsi11g00788 Lsi-Chr11:9148837 Lsi06g00340 Lsi-Chr6:3784647 4.28E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00788 - - csv:101219351 1583.16