Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00805 | ATGAGTTCATTCAAAGGCTCTCCGTACGCTAGACGGAGTGATGTGGAGTCCGGTAGCAGCAATTCCGGCGACGCGGAGGAGGAGGACTTATCTAATCCTTTTGAAATTCACACCACTAAGCATGCTTCTCTTGACAGACTCCGCCGCTGGAGACAAGCTGCACTAGTGTTAAATGCTTCTCGTCGTTTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCGTATCTCTTTAAAGCGGCTGGGGATCGTGTAACAGGACCAGGGCCTACAGCAGCAGAACCTCCAAATGGTGAATTTTCTGTTGGACCAGAGCAACTGGCTGTGTTGGTAAAGGATCGTAATGTTGAAGCTCTGGAGCAGTATGGAGGGGTTAAAGGGGTAGCAGATATGTTACAATCAAATTTAGAGAAGGGGATAATGGGTGATGATTCTGATTTATTGAAACGGAGAAACACATATGGTTCAAACACATATCCCCAGAAGCCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCTGTTGCTTCGTTGGTGCTAGGCATAAAGACTGAGGGAATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCCGTTATTCTTGTCATTGTTGTAACAGGTGCTATACATTGGTTGCTTTTTATTGTTTTCATTTATGTTGCGTGTCATGCTTATGGTTATGCTATTAGTGACTATCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAGAAGAGGAACATACTAGTGGAGGTCGTTAGAGGTGGCCGTCGAATTGAGGTCTCAATTTATGACATCGTTGTTGGTGATGTTATACCGCTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCCTAATTTCTGGACACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCGTTCCTGATGTCTGGATGCAAAGTTGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCTACTTTAATTGGTATTGTTGGACTCACAGTAGCTTTTGCTGTCTTGATTGTGCTCCTTACAAGGTATTTCACTGGTCACACCAAAAATCCAGATGGAAGCCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGTCGTGCTGTTGATGGGGCCATCAAAATTGTCACTATTGCAGTGACCATTGTTGTGGTTGCTGTGCCGGAAGGGCTTCCACTAGCTGTAACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCCTAACTTTAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGATTGATCCGCCAGAGAAGAAGTCAGAGTTGTCTCCTATGTTACACTCTATACTTATTGAAGGCATTGCTCTAAACTCAAATGGCAGTGTATATGTGCCTGAGAGTGGTGGAGAGGTGGAGGTTACAGGATCACCTACAGAGAAGGCTATTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCACTTAGATCAGAATCTGCAATTCTTCATGTTTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAATCAAGTCCATGTACACTGGAAAGGTGCTGCTGAGATAGTCTTAGCATCGTGCACACAGTATACGGATGAACATGATCAATCTGTTCCTTTAGATGAAGATAAGATGAAGTATTTTAAAAGGGCTATTGAAGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCGTATAGACCTGTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGATCCCTGTCGACCAGGAGTAAAAGATGCAGTACGACTTTGCCAAAAGGCTGGTGTTAAGGTGCGCATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCTTTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAGAGTATTCCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGCCGATCCTCTCCCAATGATAAGCTTCTCCTCGTGCAAGCGTTAAGAAAGAAAGGACATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTGCATGAGGCAGATATTGGTCTTGCAATGGGTATTCAGGGGACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTCGCTTCTGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATTCAGTTTCAGCTTACCGTTAATGTTGCAGCACTCATTATCAATGTCGTGGCAGCAGTATCCTCTGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATCATGGACACTCTCGGAGCATTAGCTTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGATCGCCAGTTGGTAGAAGAGAACCTCTTATAACAAATATCATGTGGAGGAACCTCCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTCGTCCTCAATTTTCGTGGTCGGAGTTTGCTTCATTTGAACCACTCTAATTTAGAAGCTATCAAAGTGAAGAATACGTTGATCTTTAATGCCTTTGTACTTTGTCAAATTTTCAATGAGTTTAATGCTCGAAAACCTGACGAGAAGAATATATTCAAAGGAGTCACTAAAAATTACCTCTTCATCGGGATCATTGCAATTACTGTTATTCTCCAGGTGATAATAATCGAGTTTCTTGGGAAATTCACATCCACGGTCAGGCTAAATTGGAAATATTGGATTATTTCCATAATCATTGGCGTTATCAGTTGGCCTCTAGCTCTCCTTGGGAAATTCATACCTGTTCCTGAAACCCCCTTCCATGTGCTCATTATCAGATTGTTCCGTAAACGACGACCCGGGGGAGGTTAA | 3273 | 43.05 | MSSFKGSPYARRSDVESGSSNSGDAEEEDLSNPFEIHTTKHASLDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKAAGDRVTGPGPTAAEPPNGEFSVGPEQLAVLVKDRNVEALEQYGGVKGVADMLQSNLEKGIMGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTGAIHWLLFIVFIYVACHAYGYAISDYRQSLQFQNLNKEKRNILVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLIVLLTRYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTIVEAYAGGKKIDPPEKKSELSPMLHSILIEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKLGMNFEALRSESAILHVFPFSSDKKRGGVAGQRDNQVHVHWKGAAEIVLASCTQYTDEHDQSVPLDEDKMKYFKRAIEDMASRSLRCVAIAYRPVEPENVPDGEEQLSKWALPEDDLVLLAIDPCRPGVKDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGRVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSNLEAIKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVILQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRLFRKRRPGGG | 1090 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9824443 | 9855837 | + | Lsi11G008050.1 | Lsi11g00805 | 673972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00805 | 1090 | Coils | Coil | 69 | 89 | - | - | |
Lsi11g00805 | 1090 | PRINTS | P-type cation-transporting ATPase superfamily signature | 503 | 517 | - | - | |
Lsi11g00805 | 1090 | PRINTS | P-type cation-transporting ATPase superfamily signature | 327 | 341 | - | - | |
Lsi11g00805 | 1090 | PRINTS | P-type cation-transporting ATPase superfamily signature | 806 | 825 | - | - | |
Lsi11g00805 | 1090 | PRINTS | P-type cation-transporting ATPase superfamily signature | 721 | 731 | - | - | |
Lsi11g00805 | 1090 | PRINTS | P-type cation-transporting ATPase superfamily signature | 830 | 842 | - | - | |
Lsi11g00805 | 1090 | PANTHER | CATION TRANSPORTING ATPASE | 20 | 1078 | - | - | |
Lsi11g00805 | 1090 | Pfam | Cation transport ATPase (P-type) | 555 | 636 | - | - | |
Lsi11g00805 | 1090 | SUPERFAMILY | HAD-like | 501 | 911 | IPR036412 | - | |
Lsi11g00805 | 1090 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 31 | 74 | IPR024750 | GO:0005516 | |
Lsi11g00805 | 1090 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 20 | 1078 | - | - | |
Lsi11g00805 | 1090 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 139 | 1069 | IPR023298 | - | |
Lsi11g00805 | 1090 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 773 | 886 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00805 | 1090 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 443 | 526 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00805 | 1090 | Pfam | Cation transporting ATPase, C-terminus | 891 | 1067 | IPR006068 | - | |
Lsi11g00805 | 1090 | Pfam | haloacid dehalogenase-like hydrolase | 697 | 820 | - | - | |
Lsi11g00805 | 1090 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 509 | 711 | IPR023299 | GO:0000166 | |
Lsi11g00805 | 1090 | SUPERFAMILY | Calcium ATPase, transduction domain A | 281 | 376 | IPR008250 | - | |
Lsi11g00805 | 1090 | Gene3D | - | 164 | 379 | - | - | |
Lsi11g00805 | 1090 | SFLD | p-type atpase | 485 | 858 | IPR044492 | - | |
Lsi11g00805 | 1090 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lsi11g00805 | 1090 | Pfam | E1-E2 ATPase | 282 | 481 | - | - | |
Lsi11g00805 | 1090 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 132 | 1069 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Lsi11g00805 | 1090 | CDD | P-type_ATPase_Ca_PMCA-like | 164 | 939 | - | - | |
Lsi11g00805 | 1090 | Gene3D | - | 513 | 706 | IPR023299 | GO:0000166 | |
Lsi11g00805 | 1090 | SMART | Cation_ATPase_N_a_2 | 138 | 212 | IPR004014 | - | |
Lsi11g00805 | 1090 | PRINTS | H+-transporting ATPase (proton pump) signature | 655 | 673 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00805 | 1090 | PRINTS | H+-transporting ATPase (proton pump) signature | 806 | 822 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00805 | 1090 | PRINTS | H+-transporting ATPase (proton pump) signature | 838 | 863 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g00805 | 1090 | Pfam | Cation transporter/ATPase, N-terminus | 139 | 207 | IPR004014 | - | |
Lsi11g00805 | 1090 | Gene3D | - | 190 | 1058 | - | - | |
Lsi11g00805 | 1090 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 505 | 511 | IPR018303 | - | |
Lsi11g00805 | 1090 | SFLD | Haloacid Dehalogenase | 485 | 858 | - | - | |
Lsi11g00805 | 1090 | Gene3D | - | 42 | 97 | - | - | |
Lsi11g00805 | 1090 | Gene3D | - | 500 | 851 | IPR023214 | - | |
Lsi11g00805 | 1090 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01380 | Lsi-Chr2:18820589 | Lsi11g00805 | Lsi-Chr11:9824443 | 3.58E-98 | dispersed | |
Lsi02g02841 | Lsi-Chr2:34592620 | Lsi11g00805 | Lsi-Chr11:9824443 | 0 | dispersed | |
Lsi08g01538 | Lsi-Chr8:23393219 | Lsi11g00805 | Lsi-Chr11:9824443 | 7.58E-83 | dispersed | |
Lsi09g00868 | Lsi-Chr9:10096639 | Lsi11g00805 | Lsi-Chr11:9824443 | 0 | dispersed | |
Lsi11g00453 | Lsi-Chr11:4752213 | Lsi11g00805 | Lsi-Chr11:9824443 | 0 | dispersed | |
Lsi11g00454 | Lsi-Chr11:4754865 | Lsi11g00805 | Lsi-Chr11:9824443 | 7.93E-42 | dispersed | |
Lsi11g00805 | Lsi-Chr11:9824443 | Lsi11g01354 | Lsi-Chr11:22164133 | 6.57E-93 | dispersed | |
Lsi11g00805 | Lsi-Chr11:9824443 | Lsi04g01488 | Lsi-Chr4:22556570 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00805 | K01537 | - | csv:101211703 | 1918.28 |