Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00805 ATGAGTTCATTCAAAGGCTCTCCGTACGCTAGACGGAGTGATGTGGAGTCCGGTAGCAGCAATTCCGGCGACGCGGAGGAGGAGGACTTATCTAATCCTTTTGAAATTCACACCACTAAGCATGCTTCTCTTGACAGACTCCGCCGCTGGAGACAAGCTGCACTAGTGTTAAATGCTTCTCGTCGTTTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCGTATCTCTTTAAAGCGGCTGGGGATCGTGTAACAGGACCAGGGCCTACAGCAGCAGAACCTCCAAATGGTGAATTTTCTGTTGGACCAGAGCAACTGGCTGTGTTGGTAAAGGATCGTAATGTTGAAGCTCTGGAGCAGTATGGAGGGGTTAAAGGGGTAGCAGATATGTTACAATCAAATTTAGAGAAGGGGATAATGGGTGATGATTCTGATTTATTGAAACGGAGAAACACATATGGTTCAAACACATATCCCCAGAAGCCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCTGTTGCTTCGTTGGTGCTAGGCATAAAGACTGAGGGAATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCCGTTATTCTTGTCATTGTTGTAACAGGTGCTATACATTGGTTGCTTTTTATTGTTTTCATTTATGTTGCGTGTCATGCTTATGGTTATGCTATTAGTGACTATCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAGAAGAGGAACATACTAGTGGAGGTCGTTAGAGGTGGCCGTCGAATTGAGGTCTCAATTTATGACATCGTTGTTGGTGATGTTATACCGCTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCCTAATTTCTGGACACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCGTTCCTGATGTCTGGATGCAAAGTTGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCTACTTTAATTGGTATTGTTGGACTCACAGTAGCTTTTGCTGTCTTGATTGTGCTCCTTACAAGGTATTTCACTGGTCACACCAAAAATCCAGATGGAAGCCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGTCGTGCTGTTGATGGGGCCATCAAAATTGTCACTATTGCAGTGACCATTGTTGTGGTTGCTGTGCCGGAAGGGCTTCCACTAGCTGTAACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCCTAACTTTAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGATTGATCCGCCAGAGAAGAAGTCAGAGTTGTCTCCTATGTTACACTCTATACTTATTGAAGGCATTGCTCTAAACTCAAATGGCAGTGTATATGTGCCTGAGAGTGGTGGAGAGGTGGAGGTTACAGGATCACCTACAGAGAAGGCTATTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCACTTAGATCAGAATCTGCAATTCTTCATGTTTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAATCAAGTCCATGTACACTGGAAAGGTGCTGCTGAGATAGTCTTAGCATCGTGCACACAGTATACGGATGAACATGATCAATCTGTTCCTTTAGATGAAGATAAGATGAAGTATTTTAAAAGGGCTATTGAAGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCGTATAGACCTGTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGATCCCTGTCGACCAGGAGTAAAAGATGCAGTACGACTTTGCCAAAAGGCTGGTGTTAAGGTGCGCATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCTTTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAGAGTATTCCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGCCGATCCTCTCCCAATGATAAGCTTCTCCTCGTGCAAGCGTTAAGAAAGAAAGGACATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTGCATGAGGCAGATATTGGTCTTGCAATGGGTATTCAGGGGACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTCGCTTCTGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATTCAGTTTCAGCTTACCGTTAATGTTGCAGCACTCATTATCAATGTCGTGGCAGCAGTATCCTCTGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATCATGGACACTCTCGGAGCATTAGCTTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGATCGCCAGTTGGTAGAAGAGAACCTCTTATAACAAATATCATGTGGAGGAACCTCCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTCGTCCTCAATTTTCGTGGTCGGAGTTTGCTTCATTTGAACCACTCTAATTTAGAAGCTATCAAAGTGAAGAATACGTTGATCTTTAATGCCTTTGTACTTTGTCAAATTTTCAATGAGTTTAATGCTCGAAAACCTGACGAGAAGAATATATTCAAAGGAGTCACTAAAAATTACCTCTTCATCGGGATCATTGCAATTACTGTTATTCTCCAGGTGATAATAATCGAGTTTCTTGGGAAATTCACATCCACGGTCAGGCTAAATTGGAAATATTGGATTATTTCCATAATCATTGGCGTTATCAGTTGGCCTCTAGCTCTCCTTGGGAAATTCATACCTGTTCCTGAAACCCCCTTCCATGTGCTCATTATCAGATTGTTCCGTAAACGACGACCCGGGGGAGGTTAA 3273 43.05 MSSFKGSPYARRSDVESGSSNSGDAEEEDLSNPFEIHTTKHASLDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKAAGDRVTGPGPTAAEPPNGEFSVGPEQLAVLVKDRNVEALEQYGGVKGVADMLQSNLEKGIMGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTGAIHWLLFIVFIYVACHAYGYAISDYRQSLQFQNLNKEKRNILVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLIVLLTRYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTIVEAYAGGKKIDPPEKKSELSPMLHSILIEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKLGMNFEALRSESAILHVFPFSSDKKRGGVAGQRDNQVHVHWKGAAEIVLASCTQYTDEHDQSVPLDEDKMKYFKRAIEDMASRSLRCVAIAYRPVEPENVPDGEEQLSKWALPEDDLVLLAIDPCRPGVKDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGRVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSNLEAIKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVILQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRLFRKRRPGGG 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9824443 9855837 + Lsi11G008050.1 Lsi11g00805 673972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00805 1090 Coils Coil 69 89 - -
Lsi11g00805 1090 PRINTS P-type cation-transporting ATPase superfamily signature 503 517 - -
Lsi11g00805 1090 PRINTS P-type cation-transporting ATPase superfamily signature 327 341 - -
Lsi11g00805 1090 PRINTS P-type cation-transporting ATPase superfamily signature 806 825 - -
Lsi11g00805 1090 PRINTS P-type cation-transporting ATPase superfamily signature 721 731 - -
Lsi11g00805 1090 PRINTS P-type cation-transporting ATPase superfamily signature 830 842 - -
Lsi11g00805 1090 PANTHER CATION TRANSPORTING ATPASE 20 1078 - -
Lsi11g00805 1090 Pfam Cation transport ATPase (P-type) 555 636 - -
Lsi11g00805 1090 SUPERFAMILY HAD-like 501 911 IPR036412 -
Lsi11g00805 1090 Pfam Ca2+-ATPase N terminal autoinhibitory domain 31 74 IPR024750 GO:0005516
Lsi11g00805 1090 PANTHER CALCIUM-TRANSPORTING ATPASE 20 1078 - -
Lsi11g00805 1090 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 1069 IPR023298 -
Lsi11g00805 1090 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 773 886 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00805 1090 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 443 526 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00805 1090 Pfam Cation transporting ATPase, C-terminus 891 1067 IPR006068 -
Lsi11g00805 1090 Pfam haloacid dehalogenase-like hydrolase 697 820 - -
Lsi11g00805 1090 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 509 711 IPR023299 GO:0000166
Lsi11g00805 1090 SUPERFAMILY Calcium ATPase, transduction domain A 281 376 IPR008250 -
Lsi11g00805 1090 Gene3D - 164 379 - -
Lsi11g00805 1090 SFLD p-type atpase 485 858 IPR044492 -
Lsi11g00805 1090 MobiDBLite consensus disorder prediction 1 27 - -
Lsi11g00805 1090 Pfam E1-E2 ATPase 282 481 - -
Lsi11g00805 1090 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 132 1069 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lsi11g00805 1090 CDD P-type_ATPase_Ca_PMCA-like 164 939 - -
Lsi11g00805 1090 Gene3D - 513 706 IPR023299 GO:0000166
Lsi11g00805 1090 SMART Cation_ATPase_N_a_2 138 212 IPR004014 -
Lsi11g00805 1090 PRINTS H+-transporting ATPase (proton pump) signature 655 673 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00805 1090 PRINTS H+-transporting ATPase (proton pump) signature 806 822 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00805 1090 PRINTS H+-transporting ATPase (proton pump) signature 838 863 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g00805 1090 Pfam Cation transporter/ATPase, N-terminus 139 207 IPR004014 -
Lsi11g00805 1090 Gene3D - 190 1058 - -
Lsi11g00805 1090 ProSitePatterns E1-E2 ATPases phosphorylation site. 505 511 IPR018303 -
Lsi11g00805 1090 SFLD Haloacid Dehalogenase 485 858 - -
Lsi11g00805 1090 Gene3D - 42 97 - -
Lsi11g00805 1090 Gene3D - 500 851 IPR023214 -
Lsi11g00805 1090 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01380 Lsi-Chr2:18820589 Lsi11g00805 Lsi-Chr11:9824443 3.58E-98 dispersed
Lsi02g02841 Lsi-Chr2:34592620 Lsi11g00805 Lsi-Chr11:9824443 0 dispersed
Lsi08g01538 Lsi-Chr8:23393219 Lsi11g00805 Lsi-Chr11:9824443 7.58E-83 dispersed
Lsi09g00868 Lsi-Chr9:10096639 Lsi11g00805 Lsi-Chr11:9824443 0 dispersed
Lsi11g00453 Lsi-Chr11:4752213 Lsi11g00805 Lsi-Chr11:9824443 0 dispersed
Lsi11g00454 Lsi-Chr11:4754865 Lsi11g00805 Lsi-Chr11:9824443 7.93E-42 dispersed
Lsi11g00805 Lsi-Chr11:9824443 Lsi11g01354 Lsi-Chr11:22164133 6.57E-93 dispersed
Lsi11g00805 Lsi-Chr11:9824443 Lsi04g01488 Lsi-Chr4:22556570 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00805 K01537 - csv:101211703 1918.28