Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00812 | ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGCCGCGCCTAATTCCAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCACAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCCAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGACCCAGAAACAGATGAAGTATATGCTCAAATGACCCTACTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAATTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGTGGGTTCTCCGTGCCGCGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGCATAGATGAAAAACAACAGCTTCTTTTGGGCATTAGGCGAGCGAACAGGCAACCGACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATATTATAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTCGAAACTGAAGAGTCTGGAACTAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTCCGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGACGAAATCGAGTCTCCATATGGGAGATCGAGCCTGTTATTGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCGAAACGTCCGAGGCAACCAGGAATGCCAGATGACGACTCTTCTGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAAGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATTCAATGCAGCCAAATTATATGCATTCGTTTTCTGGGTCTATGCTTCCAAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGTTTGTCAAATGCACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGTCAAGTATGAACTCGTTGGGGTCCGTGGTGCAGGCACCGCAGCAGTTGGATGATATGTCTCAGCAGACCCGACAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAGCAGCAAACTGCTTTGCAAAACCAGCAGCTTCAGAGAAGTGTCCCTCAGAATCTGCAAATGCAGCAGCATCAGCAAATTTTAGGTCAAAATCAACAACAGAATATGAATCAGTCACCGCTTCCGGAGCAGTTAAATCATCAGTTACAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAGAAGTTTCAGCAGCAGCAGCAATCAATTTTGGCTCAGCAGTCTTCTCTTCAGCCTGCTCAACTCACCCAACTACCGGAGCAGCAGAGACAGTCAGTAGATGCGTCCCAAAGCTTTTCTAGGTCCATGTCATCTAACCAAATGCTCGACATTCCTCAATCCACCCCAACTGCAGGCCCTCCATCAAATGCATTACCGCAGCAGGCAGTGAATTGCAATAGCCAGACGAATAATCGATTCTCAAATCAGCATTTGCAACCAAAACTTCCACAACTACAGCAACCACCTCCATCTACTGTGCTTTCTGATATGTCTAGGCCAGTGGGACTTCCTCCTACCCAAACAAACAATCAGCTCTCTGCAGCTACTAGTAGTTTAATAACAGGAGCAGCAGGGGCTGGCCAATCTGGTATCACTGACGACATACCATCTTGCTCCACGTCACCTTCCACGAATAATTGTCCAAGTTTGGTTCAACCGGTAGCCAATGGAAGGGTTCATCGAACCACGGGATTGGTCGAGGATGTTGCTCAATCAGCTGCAACAATATTCAGTTCAAATACGTTGGATACCATGTCACCAAATGCCAACTTAGTTCATAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATGTCCAAGAATCAAAGCCATGGAATTTTTGCACAACAAACTTTCTTGAGTGGTGTCGTTGCTCAGACGGATTTCTTGGACACGTCATCCTCCACAACCTCGGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAGTACTCAGGATTTGGAAGTGCCAACAGATCTCCATAACATTCCGTACGGGGCTCATGTCGATGGACAAATGGTAGCGCAGTTAAATTCCGATCCTTTATTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTTTCTTCTGGGGCCATGCTCACCACCTACGATGTACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCCATGGATTCAACGATAAACGATAACGCCTTCTTGAATAGAAACCAATGGGCCCCTCCGCCTCCGTTCCAACGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACCCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTGGAGGACAGGCAAAAGATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGACGTTTTGCTTGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGAAGCATCAAGATACTTTCCCCACAGGAAGTTCAACAAATGAGCTTGGATGGAGATTTCGGGAACGGGCTCAAAGTTCATAGTGTCGAATATTTGTACGGCTACGATGTCCCGTTGCGAGAATCTTGCAGCAATGGAGGAGATATAGCCAACCAACACTCAGCAATGGCTTTAGCCATTGTCTGGTTAAATTTTCTGGACCTCTTAGCCTAG | 3333 | 45.33 | MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGIDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLSNAQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSLGSVVQAPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNQQLQRSVPQNLQMQQHQQILGQNQQQNMNQSPLPEQLNHQLQMSDNQVQMQMLQKFQQQQQSILAQQSSLQPAQLTQLPEQQRQSVDASQSFSRSMSSNQMLDIPQSTPTAGPPSNALPQQAVNCNSQTNNRFSNQHLQPKLPQLQQPPPSTVLSDMSRPVGLPPTQTNNQLSAATSSLITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVANGRVHRTTGLVEDVAQSAATIFSSNTLDTMSPNANLVHKDLPQKTAVKPSLNMSKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDSTQDLEVPTDLHNIPYGAHVDGQMVAQLNSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDVQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGLKVHSVEYLYGYDVPLRESCSNGGDIANQHSAMALAIVWLNFLDLLA | 1110 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9994471 | 10001646 | + | Lsi11G008120.1 | Lsi11g00812 | 673979 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00812 | 1110 | CDD | B3_DNA | 133 | 202 | IPR003340 | GO:0003677 | |
Lsi11g00812 | 1110 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi11g00812 | 1110 | ProSiteProfiles | PB1 domain profile. | 966 | 1051 | IPR000270 | GO:0005515 | |
Lsi11g00812 | 1110 | MobiDBLite | consensus disorder prediction | 600 | 648 | - | - | |
Lsi11g00812 | 1110 | Gene3D | - | 962 | 1055 | - | - | |
Lsi11g00812 | 1110 | SMART | B3_2 | 134 | 231 | IPR003340 | GO:0003677 | |
Lsi11g00812 | 1110 | Pfam | AUX/IAA family | 964 | 1051 | IPR033389 | - | |
Lsi11g00812 | 1110 | SUPERFAMILY | CAD & PB1 domains | 979 | 1045 | - | - | |
Lsi11g00812 | 1110 | PANTHER | AUXIN RESPONSE FACTOR | 194 | 1063 | - | - | |
Lsi11g00812 | 1110 | PANTHER | AUXIN RESPONSE FACTOR | 1 | 192 | - | - | |
Lsi11g00812 | 1110 | MobiDBLite | consensus disorder prediction | 533 | 557 | - | - | |
Lsi11g00812 | 1110 | Gene3D | - | 132 | 211 | IPR015300 | - | |
Lsi11g00812 | 1110 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 194 | 1063 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi11g00812 | 1110 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1 | 192 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi11g00812 | 1110 | Pfam | Auxin response factor | 231 | 314 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Lsi11g00812 | 1110 | SUPERFAMILY | DNA-binding pseudobarrel domain | 123 | 234 | IPR015300 | - | |
Lsi11g00812 | 1110 | Gene3D | - | 269 | 339 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00116 | Lsi-Chr1:1225345 | Lsi11g00812 | Lsi-Chr11:9994471 | 2.31E-31 | dispersed | |
Lsi11g00146 | Lsi-Chr11:1625449 | Lsi11g00812 | Lsi-Chr11:9994471 | 0 | dispersed | |
Lsi11g00812 | Lsi-Chr11:9994471 | Lsi06g01682 | Lsi-Chr6:27009010 | 2.24E-18 | dispersed | |
Lsi11g00812 | Lsi-Chr11:9994471 | Lsi02g00922 | Lsi-Chr2:8889744 | 1.24E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26166 | PF02309 | AUX_IAA | 2.20E-07 | CL0072 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00812 | - | - | csv:101205542 | 1888.23 |