Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00812 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGCCGCGCCTAATTCCAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCACAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCCAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGACCCAGAAACAGATGAAGTATATGCTCAAATGACCCTACTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAATTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGTGGGTTCTCCGTGCCGCGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGCATAGATGAAAAACAACAGCTTCTTTTGGGCATTAGGCGAGCGAACAGGCAACCGACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATATTATAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTCGAAACTGAAGAGTCTGGAACTAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTCCGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGACGAAATCGAGTCTCCATATGGGAGATCGAGCCTGTTATTGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCGAAACGTCCGAGGCAACCAGGAATGCCAGATGACGACTCTTCTGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAAGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATTCAATGCAGCCAAATTATATGCATTCGTTTTCTGGGTCTATGCTTCCAAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGTTTGTCAAATGCACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGTCAAGTATGAACTCGTTGGGGTCCGTGGTGCAGGCACCGCAGCAGTTGGATGATATGTCTCAGCAGACCCGACAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAGCAGCAAACTGCTTTGCAAAACCAGCAGCTTCAGAGAAGTGTCCCTCAGAATCTGCAAATGCAGCAGCATCAGCAAATTTTAGGTCAAAATCAACAACAGAATATGAATCAGTCACCGCTTCCGGAGCAGTTAAATCATCAGTTACAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAGAAGTTTCAGCAGCAGCAGCAATCAATTTTGGCTCAGCAGTCTTCTCTTCAGCCTGCTCAACTCACCCAACTACCGGAGCAGCAGAGACAGTCAGTAGATGCGTCCCAAAGCTTTTCTAGGTCCATGTCATCTAACCAAATGCTCGACATTCCTCAATCCACCCCAACTGCAGGCCCTCCATCAAATGCATTACCGCAGCAGGCAGTGAATTGCAATAGCCAGACGAATAATCGATTCTCAAATCAGCATTTGCAACCAAAACTTCCACAACTACAGCAACCACCTCCATCTACTGTGCTTTCTGATATGTCTAGGCCAGTGGGACTTCCTCCTACCCAAACAAACAATCAGCTCTCTGCAGCTACTAGTAGTTTAATAACAGGAGCAGCAGGGGCTGGCCAATCTGGTATCACTGACGACATACCATCTTGCTCCACGTCACCTTCCACGAATAATTGTCCAAGTTTGGTTCAACCGGTAGCCAATGGAAGGGTTCATCGAACCACGGGATTGGTCGAGGATGTTGCTCAATCAGCTGCAACAATATTCAGTTCAAATACGTTGGATACCATGTCACCAAATGCCAACTTAGTTCATAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATGTCCAAGAATCAAAGCCATGGAATTTTTGCACAACAAACTTTCTTGAGTGGTGTCGTTGCTCAGACGGATTTCTTGGACACGTCATCCTCCACAACCTCGGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAGTACTCAGGATTTGGAAGTGCCAACAGATCTCCATAACATTCCGTACGGGGCTCATGTCGATGGACAAATGGTAGCGCAGTTAAATTCCGATCCTTTATTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTTTCTTCTGGGGCCATGCTCACCACCTACGATGTACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCCATGGATTCAACGATAAACGATAACGCCTTCTTGAATAGAAACCAATGGGCCCCTCCGCCTCCGTTCCAACGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACCCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTGGAGGACAGGCAAAAGATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGACGTTTTGCTTGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGAAGCATCAAGATACTTTCCCCACAGGAAGTTCAACAAATGAGCTTGGATGGAGATTTCGGGAACGGGCTCAAAGTTCATAGTGTCGAATATTTGTACGGCTACGATGTCCCGTTGCGAGAATCTTGCAGCAATGGAGGAGATATAGCCAACCAACACTCAGCAATGGCTTTAGCCATTGTCTGGTTAAATTTTCTGGACCTCTTAGCCTAG 3333 45.33 MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGIDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLSNAQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSLGSVVQAPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNQQLQRSVPQNLQMQQHQQILGQNQQQNMNQSPLPEQLNHQLQMSDNQVQMQMLQKFQQQQQSILAQQSSLQPAQLTQLPEQQRQSVDASQSFSRSMSSNQMLDIPQSTPTAGPPSNALPQQAVNCNSQTNNRFSNQHLQPKLPQLQQPPPSTVLSDMSRPVGLPPTQTNNQLSAATSSLITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVANGRVHRTTGLVEDVAQSAATIFSSNTLDTMSPNANLVHKDLPQKTAVKPSLNMSKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDSTQDLEVPTDLHNIPYGAHVDGQMVAQLNSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDVQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGLKVHSVEYLYGYDVPLRESCSNGGDIANQHSAMALAIVWLNFLDLLA 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9994471 10001646 + Lsi11G008120.1 Lsi11g00812 673979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00812 1110 CDD B3_DNA 133 202 IPR003340 GO:0003677
Lsi11g00812 1110 MobiDBLite consensus disorder prediction 1 20 - -
Lsi11g00812 1110 ProSiteProfiles PB1 domain profile. 966 1051 IPR000270 GO:0005515
Lsi11g00812 1110 MobiDBLite consensus disorder prediction 600 648 - -
Lsi11g00812 1110 Gene3D - 962 1055 - -
Lsi11g00812 1110 SMART B3_2 134 231 IPR003340 GO:0003677
Lsi11g00812 1110 Pfam AUX/IAA family 964 1051 IPR033389 -
Lsi11g00812 1110 SUPERFAMILY CAD & PB1 domains 979 1045 - -
Lsi11g00812 1110 PANTHER AUXIN RESPONSE FACTOR 194 1063 - -
Lsi11g00812 1110 PANTHER AUXIN RESPONSE FACTOR 1 192 - -
Lsi11g00812 1110 MobiDBLite consensus disorder prediction 533 557 - -
Lsi11g00812 1110 Gene3D - 132 211 IPR015300 -
Lsi11g00812 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 194 1063 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi11g00812 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 192 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi11g00812 1110 Pfam Auxin response factor 231 314 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi11g00812 1110 SUPERFAMILY DNA-binding pseudobarrel domain 123 234 IPR015300 -
Lsi11g00812 1110 Gene3D - 269 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00116 Lsi-Chr1:1225345 Lsi11g00812 Lsi-Chr11:9994471 2.31E-31 dispersed
Lsi11g00146 Lsi-Chr11:1625449 Lsi11g00812 Lsi-Chr11:9994471 0 dispersed
Lsi11g00812 Lsi-Chr11:9994471 Lsi06g01682 Lsi-Chr6:27009010 2.24E-18 dispersed
Lsi11g00812 Lsi-Chr11:9994471 Lsi02g00922 Lsi-Chr2:8889744 1.24E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26166 PF02309 AUX_IAA 2.20E-07 CL0072 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00812 - - csv:101205542 1888.23