Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00815 ATGAGGCATTCTGCAGCAAAGTTTGGTTTCCTTTGCTCAGTCTCTTCACTAGCTTTGGGATTGCTCACCAAGTTCATTTTCCCCAGTTTATTCTTGTCCATCTCCCCAAACATCCTTCCAATCACTCTTTCCATTGCAGTTGTTTTTTCTTTCATCTTCTTTGCCTTATCCAACTTCTTCAAAAATCCTCCAGGTCCTCTCTCTGTTCCCATCTTTGGGAATTGGCTTCAAGTTGGCAATGATCTCAACCATCGCCTTCTTGCTTCTTTGTCGCAAAAATATGGCTCTGTCTTCCGACTCAAACTTGGTTACAAGAATCTAGTTGTGGTGTCTGATGCTGAGCTTGCTAACCAAGTCCTCCATGCTCAAGGTGTGGAGTTTGGATCTCGTCCCCGAAATGTCGTCTTTGACATTTTCACTGGTAATGGACAAGATATGGTGTTCACCATTTATGGCGACCATTGGCGGAAAATGCGTAGAATCATGACACTGCCATTTTTTACAAACAAAGTTGTGCATAACTACAGTGGCATGTGGGAGGAAGAAATGGATTTGGTTGTCCGTGATCTTATGAATAACCCAAATATAAAATCGGAAGGGTTAGTCATAAGAAAGCGTTTGCAATTGATGTTGTACAACATCATGTATAGAATGATGTTTGATACCAAATTTGAATCTCAAGATGATCCTTTATTCATTGAGGCAACTAAATTCAACTCCGAAAGAAGTCGATTGGCACAAAGTTTTGAATACAATTATGGAGATTTCATTCCTCTGCTTAGACCCTTTTTGAGGGGTTACTTGAACAAATGCAAGGATTTGCAAAGCAGGAGGTTGGCATTTTTCAACAGTAACTATGTTGAGAAAAGAAGAAAAATTATGGCTGCCAATGGAGACAAGCACAGGATAAGTTGTGCCATGGATCATATTATAGATGCTCAGCTAAAAGGAGAAATTAGTGAAGAGAATGTGATCTACATTGTGGAAAATATTAATGTTGCAGCAATAGAGACGACACTTTGGTCGATGGAGTGGGCAATAGCTGAGTTGGTAAACCATCCAACTGTACAACAAAAAATCCGAGAGGAAATCTCAACTGTCCTAAAAGGAAAGGAAGTCACCGAATCTAACTTACATGAGTTGCCATATCTGCAAGCCACAGTGAAAGAGACATTGAGACTGCACACACCAATACCTTTATTAGTACCACATATGAACTTGGAAGAAGCCAAGCTTGGAGGCTACACAATTCCAAAAGAGTCTAAGGTGGTTGTAAATGCATGGTGGCTGGCCAATAACCCAGCATGGTGGAAAAATCCAGAGGAATTCAGGCCAGAGAGGTTCCTTCAAGAAGAAAGTAGCACAGAAGCTGTAGCAGGAGGCAAAGTCGACTTCCGATTCTTACCATTTGGTGTTGGAAGGAGAAGTTGCCCTGGAATTGTTTTGGCGCTACCAATCTTGGGATTGATCATTTCTAAGTTGGTGACTCATTTTGAAATGAAGCCTCCAATTGGGATGGGGAAGATTGATGTGAGTGAAAAAGGAGGACAATTCAGTTTGCATATTGCCAACCACTCAACTGTGGCATTCAAACCTATAACTGCTTAG 1608 41.11 MRHSAAKFGFLCSVSSLALGLLTKFIFPSLFLSISPNILPITLSIAVVFSFIFFALSNFFKNPPGPLSVPIFGNWLQVGNDLNHRLLASLSQKYGSVFRLKLGYKNLVVVSDAELANQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTIYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEEEMDLVVRDLMNNPNIKSEGLVIRKRLQLMLYNIMYRMMFDTKFESQDDPLFIEATKFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSRRLAFFNSNYVEKRRKIMAANGDKHRISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPTVQQKIREEISTVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPAWWKNPEEFRPERFLQEESSTEAVAGGKVDFRFLPFGVGRRSCPGIVLALPILGLIISKLVTHFEMKPPIGMGKIDVSEKGGQFSLHIANHSTVAFKPITA 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10061167 10066056 - Lsi11G008150.1 Lsi11g00815 673982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00815 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Lsi11g00815 535 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 Pfam Cytochrome P450 63 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 Gene3D Cytochrome P450 57 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 11 534 - -
Lsi11g00815 535 SUPERFAMILY Cytochrome P450 63 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 115 136 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00815 535 PANTHER OS02G0467000 PROTEIN 11 534 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01487 Lsi-Chr10:19009439 Lsi11g00815 Lsi-Chr11:10061167 0 dispersed
Lsi11g00815 Lsi-Chr11:10061167 Lsi11g00817 Lsi-Chr11:10082791 0 dispersed
Lsi11g00815 Lsi-Chr11:10061167 Lsi11g00816 Lsi-Chr11:10072961 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00815 K00487 - csv:101205775 1006.51