Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00816 ATGGCTTCCAATGCCTTCTTTTCTCTCTTTTCAATCCTTCTTGTTTCTCTTATTACTAAGTTCATATTCCCAATGTCTCCACTTGCTTTTGCAGTAACCATCTTCCTTGTTCCTCTCCTTACTTATATCATCTCTTCCATGGCCTTCTCCTCCAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATCTTTGGCAATTGGCTCCAAGTTGGTAATGATCTCAACCATCGCCTTCTTGCTTCCTTCTGCAAGAGATTTGGCTCCATATTCCTCTTGAAGCTCGGTTCCAAGAACCTCGTTGTCGTGTCTGATGCCGAGCTTGCTAGCCAAGTTCTCCATGCACAAGGCGTTGAGTTTGGCTCTCGCCCTCGAAATGTCGTGTTTGATATCTTCACTGGAAATGGTCAGGATATGGTGTTTACGGTTTATGGAGACCATTGGCGTAAGATGCGTAGAATCATGACGTTGCCGTTTTTTACGAACAAAGTTGTGCATAACTACAGTGATATGTGGGAGGATGAGATGGACTCTGTGGTTCGTGACCTTAAGAGTAACAAGAAGTTTCAATCAGAAGGGATAGTCATTAGAAAGCGTTTGCAATTGATGTTGTATAATATCATGTATCGAATGATGTTTGATGCAAAGTTTGAGTCCCAAGACGATCCTTTGTTCATTGAAGCAACTCGATTCAACTCAGAAAGGAGTCGATTGGCACAAAGCTTTGAGTACAATTATGGAGATTTCATTCCGTTGCTCAGACCTTTCTTGCGAGGTTACTTGAACAAGTGTAGAGATTTGCAAAGTAGGAGATTGGACTTTTTCAACAAAAACTACGTGGAGAAAAGAAGGAAGATAATGGCTGCCAATGGAGATAAGCACAAGATAAGTTGTGCCATGGATCATATCATAGACGCTCAACTGAAAGGTGAGATAAGTGAAGAGAATGTGATTTACATTGTAGAGAACATCAACGTGGCCGCTATAGAAACGACACTTTGGTCAATGGAATGGGCGATAGCTGAGCTAGTGAATCATCCAGAAATCCAACACAAGATTCGAGAAGAGATTGCTAATGTCCTAGAAGGAAAGGAAGTGACTGAATCTAACCTTCATGAATTGCCATACTTGCAAGCAACGGTAAAAGAAACACTTAGGTTGCACACTCCAATTCCATTGTTGGTGCCACATATGAACTTGGAAGAAGCAAAGCTAGGAGGGTACACCATTCCAAAGGAATCCAAGGTGGTAGTGAATGCTTGGTGGTTGGCTAATAACCCTGAGTGGTGGAAAAATCCAGAAGAATTTAGGCCAGAGAGGTTCTTTGAAGAAGAAAGTGGAACAGAGGCTGTCGCTGCAGGGAAAGTGGATTATCGATTCTTACCATTTGGAGTTGGAAGAAGGAGTTGCCCTGGAATTGTCTTAGCAATGCCAATCTTAGGACTCATTGTTGCTAAGTTAGTTTCAAAGTTTGAAATGAAGCCTCTGAGTAGATTGGAGAAGATTGATGTCAGTGAGAAAGGTGGACAATTTAGCTTGCATATCGCCAACCACTCAACGGTTGTTTTTAACCCCATAATGACTTAA 1581 42.25 MASNAFFSLFSILLVSLITKFIFPMSPLAFAVTIFLVPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASFCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSDMWEDEMDSVVRDLKSNKKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQDDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMAANGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQHKIREEIANVLEGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGTEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPLSRLEKIDVSEKGGQFSLHIANHSTVVFNPIMT 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10072961 10074851 - Lsi11G008160.1 Lsi11g00816 673983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00816 526 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 4 525 - -
Lsi11g00816 526 PANTHER OS02G0467000 PROTEIN 4 525 - -
Lsi11g00816 526 Gene3D Cytochrome P450 48 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 106 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 82 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 Pfam Cytochrome P450 54 514 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 SUPERFAMILY Cytochrome P450 54 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00816 526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00816 Lsi-Chr11:10072961 Lsi03g01628 Lsi-Chr3:27403667 1.59E-77 dispersed
Lsi11g00815 Lsi-Chr11:10061167 Lsi11g00816 Lsi-Chr11:10072961 0 tandem
Lsi11g00816 Lsi-Chr11:10072961 Lsi11g00817 Lsi-Chr11:10082791 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00816 K00487 - csv:105434566 1009.98