Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00817 ATGGCTTTCTTTGCTACAAAATCTAGTGCTTTCTTTTCTCTCTTTACAATGCTTCTTGTTTCTCTTATTACTAAGTTCATATTTCCCATGTCTCCACTTGCTTTCGGAGTCACAATCTTCCTTGTTCCTCTCTTTACTTATATTATCTCTTCCATGGCCTTCTCCTCCAAGCTTCCTCCTGGTCCTCTCTCCATTCCCATCTTTGGCAATTGGCTCCAAGTTGGTAATGATCTCAACCATCGCCTTCTCGCTTCCTTGTGCAAGAGATTTGGCTCTATATTCCTCTTGAAGCTCGGTTCTAAGAACCTCGTTGTCGTGTCTGATGCTGAGCTTGCTAGCCAAGTTCTCCATGCACAAGGCGTCGAGTTTGGCTCTCGCCCTCGAAATGTCGTGTTTGATATCTTCACTGGAAATGGTCAAGATATGGTGTTTACGGTTTATGGAGACCATTGGCGTAAGATGCGCAGAATCATGACATTGCCGTTTTTTACGAACAAAGTTGTGCACAGCTACAGTGGTATGTGGGAAGATGAGATGGACTCTGTGGTTCGTGACCTTAAGAGTAACAAGAAGTTTCAATCAGAAGGGATAGTCATTAGAAAGCGTTTGCAATTGATGTTGTATAATATCATGTATCGAATGATGTTTGATGTAAAGTTTGAGTCCCAAGAGGATCCTTTGTTCATTGAAGCAACTCGATTCAATTCAGAAAGGAGTCGATTGGCACAAAGCTTTGAGTACAATTATGGAGATTTTATTCCATTACTCAGACCCTTCTTGCGAGGTTACTTGAACAAGTGTAGAGATTTGCAAAGTAGAAGATTGGACTTTTTCAACAAAAACTACGTGGAGAAAAGAAGAAAGATAATGGCTGTCAATGGAGATAAGCACAAGATAAGTTGTGCCATGGATCATATCATAGACGCCCAACTGAAAGGTGAGATAAGTGAAGAGAATGTGATTTACATCGTGGAGAACATCAACGTGGCCGCTATAGAAACAACACTTTGGTCGATGGAATGGGCGATAGCTGAGCTAGTGAATCATCCAGAAATCCAACACAAGATTCGAGAGGAGATTGCTAAAGTCCTAAAAGGAAAGGAAGTGACTGAATCTAACCTACATGAATTGCCATACTTGCAAGCAACAGTAAAAGAAACACTTAGGTTGCACACTCCAATTCCATTGTTGGTGCCACATATGAACTTGGAAGAAGCAAAGCTAGGAGGGTACACCATTCCAAAGGAATCCAAGGTGGTGGTAAATGCATGGTGGCTGGCTAATAACCCGGAGTGGTGGAAAAATCCAGAAGAGTTTAGGCCAGAGAGGTTCTTTGAAGAAGAAAGTGGAACAGAGGCTGTTGCTGCAGGGAAAGTTGATTATCGATTCTTACCATTTGGAGTTGGAAGGAGGAGTTGCCCTGGCATTGTTTTGGCAATGCCAATCTTAGGACTCATTGTTGCTAAGTTGGTTTCAAAGTTTGAAATGAAACCTCCTAATGAATTGGAGAAGATTGATGTCACAGAGAAAGGAGGACAATTCAGTCTGCATATTGCCAACCACTCAACCGTCGTTTTTGACCCCATTACTATTGCTTAA 1599 41.84 MAFFATKSSAFFSLFTMLLVSLITKFIFPMSPLAFGVTIFLVPLFTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHSYSGMWEDEMDSVVRDLKSNKKFQSEGIVIRKRLQLMLYNIMYRMMFDVKFESQEDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMAVNGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQHKIREEIAKVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGTEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPNELEKIDVTEKGGQFSLHIANHSTVVFDPITIA 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10082791 10084579 - Lsi11G008170.1 Lsi11g00817 673984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00817 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Lsi11g00817 532 SUPERFAMILY Cytochrome P450 59 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 206 224 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 Pfam Cytochrome P450 59 519 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 8 530 - -
Lsi11g00817 532 Gene3D Cytochrome P450 53 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00817 532 PANTHER OS02G0467000 PROTEIN 8 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00815 Lsi-Chr11:10061167 Lsi11g00817 Lsi-Chr11:10082791 0 dispersed
Lsi11g00817 Lsi-Chr11:10082791 Lsi03g01628 Lsi-Chr3:27403667 4.52E-77 dispersed
Lsi11g00816 Lsi-Chr11:10072961 Lsi11g00817 Lsi-Chr11:10082791 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00817 K00487 - csv:101204747 1016.14