Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00823 ATGGAAGCATCCATGGTGGATTCCGACATATCGTACGTCAGCAGTGGGAGGCGGAGCGTGGACCCTGGCTTCCAAGGGGCGTGGAACTCCGGCACCGGCACCGACTCGTATCGCCTTTCTAACGGCTCTGAGTTTGAAGTTTTCAGTCCCGGTTCGGCTTCGCTTATTATGGAAATGGGAGGAGGAACTGACAAATCCATTGTTTATAATAATGATAATTACAATAACAACAACAACGACGCTTCTTCTTACCCTCAGGATATGTCCTTTTGCTCTTTACAAAGTGAGACCTTCTCTTGGCCTTCCCATTCTCACGCTCAGGATGATGTTGAAGCAGAGATGAGAAGGCTGAAATTGGAGCTCAAACAAACTATGGATATGTATAGTACAGCTTGCAAAGAAGCCCTAAATGCCAAGCAAAAGGCGATGGAGCTCCATCGCTGGAAAGTGGAAGAAGAACAGAGGTTAGAAGAGGCGAGAATGGCGGAGGAAGCAGCATTAGCAATGGCGAAGAAGGAGAAGGTGAAATGCAAAGCAGCGATGGAGGCAGCAGAAACTGCACAAAAGATCGCAGCACTTGAGGCGAGGAAAAGAGCGAGCGTGGAGAAAATGGCGGACATGGAAGCACAGGAAACGAAAAGAACACTTTCATTTTCAGGATTCGGCCATGCAGAAATCGGTTACAGAAAGTACACAATCCAAGAAATTGAAACCGCCACGAAAGGCTTCTCCGATTCTCTGAAGATCGGTGAAGGTGGTTACGGTCCAGTCTTCCGTGGAGAACTCGACCACACGCCGGTGGCGATCAAGGTTCTCCGACCGGATGCCGCTCATGGACGATCACAATTTCAACAAGAAGTTGAAGTTCTAAGTTGTATTCGACATCCAAATATGGTTCTTCTTCTCGGAGCCTGTCCTGAAAACGGTTGTTTAGTGTACGAATTCATGGCGAATGGAAGCTTAGAAGACTGTCTCTTCCGAAAAGCCAACAATCCAGTTCTTTCATGGCAGATACGATTCCGAATCGCGGCGGAGATCGCGACCGGACTTCTCTTCCTACACCAAACCAGACCAGAGCCGATTGTACACCGTGATCTGAAACCAGGGAACATTTTGCTAGATCGAAACTACGTGAGCAAAATCAGCGACGTCGGACTGGCGAGGCTGGTTCCTCCGTCAGTGGCCGATTCAGTGACTCAGTATCGGATGACGGCGACGGCAGGGACGTTCTTCTACATCGATCCAGAGTATCAACAAACAGGATTGCTAGGGATTAAATCAGACATTTACTCGCTGGGTGTGATGCTTCTGCAAATAATCACAGCTAAGCCGCCGATTGGACTGGCGCACGCCGTGGAAAGGGCGATTGAGAAGGGGAAATTTGCAGAGATGCTTGATCCAGAGGTGGAGGACTGGCCGGTTGAAGACGCGTTGAAGTTTGCGAAGCTTTCGATTAAATGTGCAGAGATGAGGAAGAGAGATCGACCGGATCTTGGGAAGGTGGTGCTACCGGAGCTTAATCGGTTGAGAACGATGGCGGAAGAGAGTATGGGACTTCGGTCGTTCTGCGGCAGTAGTACGTGTTCATCGCCATATGCAAGCCAGACTTCTCAGGAAATGATAAGTAGTGTACATCAAGAGCGTTGTGGAGCATGGCTTGAGAGCTCAAGCAGCCAATCAGATAGCAGCACGTCATCATATTCAGGCAAAAGACCTCATTGGCTGGACTAG 1731 49.16 MEASMVDSDISYVSSGRRSVDPGFQGAWNSGTGTDSYRLSNGSEFEVFSPGSASLIMEMGGGTDKSIVYNNDNYNNNNNDASSYPQDMSFCSLQSETFSWPSHSHAQDDVEAEMRRLKLELKQTMDMYSTACKEALNAKQKAMELHRWKVEEEQRLEEARMAEEAALAMAKKEKVKCKAAMEAAETAQKIAALEARKRASVEKMADMEAQETKRTLSFSGFGHAEIGYRKYTIQEIETATKGFSDSLKIGEGGYGPVFRGELDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPENGCLVYEFMANGSLEDCLFRKANNPVLSWQIRFRIAAEIATGLLFLHQTRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDIYSLGVMLLQIITAKPPIGLAHAVERAIEKGKFAEMLDPEVEDWPVEDALKFAKLSIKCAEMRKRDRPDLGKVVLPELNRLRTMAEESMGLRSFCGSSTCSSPYASQTSQEMISSVHQERCGAWLESSSSQSDSSTSSYSGKRPHWLD 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10203339 10206959 - Lsi11G008230.1 Lsi11g00823 673990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00823 576 MobiDBLite consensus disorder prediction 554 576 - -
Lsi11g00823 576 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 77 544 - -
Lsi11g00823 576 SMART serkin_6 243 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00823 576 SUPERFAMILY Protein kinase-like (PK-like) 221 502 IPR011009 -
Lsi11g00823 576 MobiDBLite consensus disorder prediction 554 570 - -
Lsi11g00823 576 Coils Coil 190 210 - -
Lsi11g00823 576 Coils Coil 153 187 - -
Lsi11g00823 576 ProSiteProfiles Protein kinase domain profile. 243 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00823 576 Coils Coil 107 127 - -
Lsi11g00823 576 PANTHER OS02G0152300 PROTEIN 77 544 - -
Lsi11g00823 576 Pfam Protein kinase domain 246 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00823 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Lsi11g00823 576 Gene3D Phosphorylase Kinase; domain 1 223 315 - -
Lsi11g00823 576 Gene3D Transferase(Phosphotransferase) domain 1 316 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00178 Lsi-Chr11:1853251 Lsi11g00823 Lsi-Chr11:10203339 2.31E-121 dispersed
Lsi11g00823 Lsi-Chr11:10203339 Lsi11g01167 Lsi-Chr11:20180516 0 dispersed
Lsi11g00823 Lsi-Chr11:10203339 Lsi08g01117 Lsi-Chr8:19813869 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84034 PF00069 Pkinase 3.90E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00823 - - cmo:103499012 940.643