Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00825 ATGGCGGCGAAAACTGAAGGTAAAGCCATTGGAATCGACCTCGGCACCACCTACAGCTGCGTCGGGGTTTGGCTCAACGATCGTGTTGAAATTATCCCCAATGATCAAGGTAACCGAACCACTCCTTCTTATGTGGCTTTCACCGACACTGAGCGTTTGATTGGCGATGCGGCTAAGAATCAGGTCGCTATGAATCCTCAGAACACTGTCTTCGATGCCAAGCGGTTGATCGGCCGAAGACTCTCCGATCCCTCTGTTCAGAGCGATATGAAGCTTTGGCCATTCAAAGTGGTTGCCGGACCGGGAGACAAGCCGATGATTATTGTTAACTACAAAGGTGAAGAGAAGCAGTTTGCTCCGGAGGAGATTTCTTCTATGGTTTTGACTAAGATGAAAGAAATCGCGGAAGCTTTTATAGGGCAAACTATCAAGAACGCTGTAGTTACAGTACCTGCTTATTTCAATGATTCACAGAGACAAGCGACGAAGGATGCGGGTGCTATTGCTGGACTCAACGTGATGCGTATCATCAACGAGCCAACGGCGGCGGCGATTGCGTATGGTCTGGACAAAAAGGCCTCTCGTAGAGGCGAACAGAACGTGCTGATCTTCGACCTCGGCGGTGGAACTTTCGATGTGTCGCTTTTGACAATAGAAGAGGGGATTTTCGAGGTCAAAGCCACCGCCGGCGATACACATCTCGGCGGTGAAGATTTCGATAACAGACTCGTAAATCACTTCGTGACAGAGTTCAAGCGGAAGAACAAGAAAGATATCAGCGGCAATGCGCGGGCGTTAAGGAGGTTGAGGACGGCCTGCGAGCGAGCGAAAAGAGCGCTGTCATCAACGACGCAGACGACGATTGAAGTCGATTCCCTTTATGAAGGTATTGATTTCTATGCGACAATAACTAGGGCTAGATTTGAGGAACTGTGCATGGATATGTTCATGAAGTGTATGGAGCCTGTGGAGAAATGTATTCGTGATGCTAAAATTGATAAAAGCCAAGTTCATGAGGTGGTTTTGGTTGGTGGATCCACAAGAATTCCGAAAGTTCAGCAGCTTCTGCAAGATTACTTCAATGGAAAGGAGCTCTGCAAAAGTATCAACCCGGATGAAGCTGTTGCTTATGGTGCTGCTGTTCAGGCTGCAATTCTAAGTGGGGAAGGAGACGAGAAAGTTCAAGATCTTCTACTCCTCGACGTCACGCCGTTGAGTCTTGGTCTAGAGACGGCGGGTGGCGTAATGACCGTCCTAATTCCAAGGAACACAACAATCCCAACAAAGAAAGAACAAATATTCTCGACATACTCCGACAACCAACCAGGAGTGTTAATCCAAGTATACGAAGGAGAGCGAGCAAGAACCAAAGACAACAACCTACTTGGAAAATTCGAGCTCACCGGTATTCCTCCAGCACCAAGAGGTGTGCCACAAATCAACGTAGTGTTCGACATCGACGCCAACGGCATCCTAAATGTATTGGCAGAGGACAAAACTGCAGGAGTAAAGAACAAGATCACAATCACAAATGACAAAGGGAGGATGAGCAAGGACGAGATAGAAAGGCTGGTGAAAGAAGCAGAGAAATACAAAGCAGAGGATGAGGAAGTGAAGAAGAAAGTTGAGGCTAAGAATGCGTTGGAGAATTATGCATATAATATGAGGAATACTGTGAGGGATGAGAAATTCGCAGGGAAATTGAATCCAGAAGATAAGCAGAAGATTGAGAAATCTGTGGAGGATACAATTGAGTGGTTGGATAGGAACCAATTGGCGGAGGTTGATGAGCTTGAAGACAAGCTGAAGGAGCTTGAGGGTGTTTGTAATCCCATCATTGCTAAGATGTACCAGGGCGGTGCCGGCGGAGCACCGCCGATGGGCGATGATATGCCAGGCGGTGGCTCTGCCCAGTCCGGCGGCGCTGGGCCAAAGATTGAGGAGGTTGATTGA 1953 47.93 MAAKTEGKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRLSDPSVQSDMKLWPFKVVAGPGDKPMIIVNYKGEEKQFAPEEISSMVLTKMKEIAEAFIGQTIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRRGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKNKKDISGNARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFYATITRARFEELCMDMFMKCMEPVEKCIRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDYFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVVFDIDANGILNVLAEDKTAGVKNKITITNDKGRMSKDEIERLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTVRDEKFAGKLNPEDKQKIEKSVEDTIEWLDRNQLAEVDELEDKLKELEGVCNPIIAKMYQGGAGGAPPMGDDMPGGGSAQSGGAGPKIEEVD 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10226844 10229699 + Lsi11G008250.1 Lsi11g00825 673992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00825 650 Coils Coil 266 286 - -
Lsi11g00825 650 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lsi11g00825 650 Coils Coil 588 608 - -
Lsi11g00825 650 Gene3D - 545 619 IPR029048 -
Lsi11g00825 650 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Lsi11g00825 650 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Lsi11g00825 650 Coils Coil 514 545 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 396 415 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 36 48 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 8 21 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 58 66 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 146 166 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 209 219 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 369 389 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 337 353 - -
Lsi11g00825 650 PRINTS 70kDa heat shock protein signature 477 493 - -
Lsi11g00825 650 MobiDBLite consensus disorder prediction 618 650 - -
Lsi11g00825 650 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Lsi11g00825 650 PANTHER HEAT SHOCK PROTEIN 70KDA 1 625 IPR013126 GO:0005524|GO:0140662
Lsi11g00825 650 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lsi11g00825 650 Gene3D - 192 366 - -
Lsi11g00825 650 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lsi11g00825 650 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lsi11g00825 650 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Lsi11g00825 650 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Lsi11g00825 650 Gene3D Actin; Chain A, domain 4 235 318 - -
Lsi11g00825 650 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
Lsi11g00825 650 Gene3D - 71 126 - -
Lsi11g00825 650 Gene3D - 10 384 - -
Lsi11g00825 650 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 1 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01652 Lsi-Chr2:22326465 Lsi11g00825 Lsi-Chr11:10226844 1.08E-69 dispersed
Lsi02g01657 Lsi-Chr2:22358510 Lsi11g00825 Lsi-Chr11:10226844 0 dispersed
Lsi04g01203 Lsi-Chr4:18571465 Lsi11g00825 Lsi-Chr11:10226844 6.94E-85 dispersed
Lsi05g01597 Lsi-Chr5:23711795 Lsi11g00825 Lsi-Chr11:10226844 1.25E-87 dispersed
Lsi09g00168 Lsi-Chr9:1751792 Lsi11g00825 Lsi-Chr11:10226844 0 dispersed
Lsi09g01011 Lsi-Chr9:13848300 Lsi11g00825 Lsi-Chr11:10226844 9.01E-180 dispersed
Lsi11g00825 Lsi-Chr11:10226844 Lsi01g01415 Lsi-Chr1:12295409 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00825 K03283 - csv:101215564 1181.01