Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00825 | ATGGCGGCGAAAACTGAAGGTAAAGCCATTGGAATCGACCTCGGCACCACCTACAGCTGCGTCGGGGTTTGGCTCAACGATCGTGTTGAAATTATCCCCAATGATCAAGGTAACCGAACCACTCCTTCTTATGTGGCTTTCACCGACACTGAGCGTTTGATTGGCGATGCGGCTAAGAATCAGGTCGCTATGAATCCTCAGAACACTGTCTTCGATGCCAAGCGGTTGATCGGCCGAAGACTCTCCGATCCCTCTGTTCAGAGCGATATGAAGCTTTGGCCATTCAAAGTGGTTGCCGGACCGGGAGACAAGCCGATGATTATTGTTAACTACAAAGGTGAAGAGAAGCAGTTTGCTCCGGAGGAGATTTCTTCTATGGTTTTGACTAAGATGAAAGAAATCGCGGAAGCTTTTATAGGGCAAACTATCAAGAACGCTGTAGTTACAGTACCTGCTTATTTCAATGATTCACAGAGACAAGCGACGAAGGATGCGGGTGCTATTGCTGGACTCAACGTGATGCGTATCATCAACGAGCCAACGGCGGCGGCGATTGCGTATGGTCTGGACAAAAAGGCCTCTCGTAGAGGCGAACAGAACGTGCTGATCTTCGACCTCGGCGGTGGAACTTTCGATGTGTCGCTTTTGACAATAGAAGAGGGGATTTTCGAGGTCAAAGCCACCGCCGGCGATACACATCTCGGCGGTGAAGATTTCGATAACAGACTCGTAAATCACTTCGTGACAGAGTTCAAGCGGAAGAACAAGAAAGATATCAGCGGCAATGCGCGGGCGTTAAGGAGGTTGAGGACGGCCTGCGAGCGAGCGAAAAGAGCGCTGTCATCAACGACGCAGACGACGATTGAAGTCGATTCCCTTTATGAAGGTATTGATTTCTATGCGACAATAACTAGGGCTAGATTTGAGGAACTGTGCATGGATATGTTCATGAAGTGTATGGAGCCTGTGGAGAAATGTATTCGTGATGCTAAAATTGATAAAAGCCAAGTTCATGAGGTGGTTTTGGTTGGTGGATCCACAAGAATTCCGAAAGTTCAGCAGCTTCTGCAAGATTACTTCAATGGAAAGGAGCTCTGCAAAAGTATCAACCCGGATGAAGCTGTTGCTTATGGTGCTGCTGTTCAGGCTGCAATTCTAAGTGGGGAAGGAGACGAGAAAGTTCAAGATCTTCTACTCCTCGACGTCACGCCGTTGAGTCTTGGTCTAGAGACGGCGGGTGGCGTAATGACCGTCCTAATTCCAAGGAACACAACAATCCCAACAAAGAAAGAACAAATATTCTCGACATACTCCGACAACCAACCAGGAGTGTTAATCCAAGTATACGAAGGAGAGCGAGCAAGAACCAAAGACAACAACCTACTTGGAAAATTCGAGCTCACCGGTATTCCTCCAGCACCAAGAGGTGTGCCACAAATCAACGTAGTGTTCGACATCGACGCCAACGGCATCCTAAATGTATTGGCAGAGGACAAAACTGCAGGAGTAAAGAACAAGATCACAATCACAAATGACAAAGGGAGGATGAGCAAGGACGAGATAGAAAGGCTGGTGAAAGAAGCAGAGAAATACAAAGCAGAGGATGAGGAAGTGAAGAAGAAAGTTGAGGCTAAGAATGCGTTGGAGAATTATGCATATAATATGAGGAATACTGTGAGGGATGAGAAATTCGCAGGGAAATTGAATCCAGAAGATAAGCAGAAGATTGAGAAATCTGTGGAGGATACAATTGAGTGGTTGGATAGGAACCAATTGGCGGAGGTTGATGAGCTTGAAGACAAGCTGAAGGAGCTTGAGGGTGTTTGTAATCCCATCATTGCTAAGATGTACCAGGGCGGTGCCGGCGGAGCACCGCCGATGGGCGATGATATGCCAGGCGGTGGCTCTGCCCAGTCCGGCGGCGCTGGGCCAAAGATTGAGGAGGTTGATTGA | 1953 | 47.93 | MAAKTEGKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRLSDPSVQSDMKLWPFKVVAGPGDKPMIIVNYKGEEKQFAPEEISSMVLTKMKEIAEAFIGQTIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRRGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKNKKDISGNARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFYATITRARFEELCMDMFMKCMEPVEKCIRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDYFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVVFDIDANGILNVLAEDKTAGVKNKITITNDKGRMSKDEIERLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTVRDEKFAGKLNPEDKQKIEKSVEDTIEWLDRNQLAEVDELEDKLKELEGVCNPIIAKMYQGGAGGAPPMGDDMPGGGSAQSGGAGPKIEEVD | 650 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10226844 | 10229699 | + | Lsi11G008250.1 | Lsi11g00825 | 673992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00825 | 650 | Coils | Coil | 266 | 286 | - | - | |
Lsi11g00825 | 650 | SUPERFAMILY | Actin-like ATPase domain | 8 | 191 | IPR043129 | - | |
Lsi11g00825 | 650 | Coils | Coil | 588 | 608 | - | - | |
Lsi11g00825 | 650 | Gene3D | - | 545 | 619 | IPR029048 | - | |
Lsi11g00825 | 650 | SUPERFAMILY | Heat shock protein 70kD (HSP70), peptide-binding domain | 392 | 549 | IPR029047 | - | |
Lsi11g00825 | 650 | SUPERFAMILY | Actin-like ATPase domain | 197 | 388 | IPR043129 | - | |
Lsi11g00825 | 650 | Coils | Coil | 514 | 545 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 396 | 415 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 36 | 48 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 8 | 21 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 58 | 66 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 146 | 166 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 209 | 219 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 369 | 389 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 337 | 353 | - | - | |
Lsi11g00825 | 650 | PRINTS | 70kDa heat shock protein signature | 477 | 493 | - | - | |
Lsi11g00825 | 650 | MobiDBLite | consensus disorder prediction | 618 | 650 | - | - | |
Lsi11g00825 | 650 | Gene3D | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 391 | 544 | IPR029047 | - | |
Lsi11g00825 | 650 | PANTHER | HEAT SHOCK PROTEIN 70KDA | 1 | 625 | IPR013126 | GO:0005524|GO:0140662 | |
Lsi11g00825 | 650 | ProSitePatterns | Heat shock hsp70 proteins family signature 3. | 340 | 354 | IPR018181 | - | |
Lsi11g00825 | 650 | Gene3D | - | 192 | 366 | - | - | |
Lsi11g00825 | 650 | ProSitePatterns | Heat shock hsp70 proteins family signature 1. | 12 | 19 | IPR018181 | - | |
Lsi11g00825 | 650 | ProSitePatterns | Heat shock hsp70 proteins family signature 2. | 203 | 216 | IPR018181 | - | |
Lsi11g00825 | 650 | CDD | HSPA1-2_6-8-like_NBD | 9 | 387 | - | - | |
Lsi11g00825 | 650 | Pfam | Hsp70 protein | 9 | 618 | IPR013126 | GO:0005524|GO:0140662 | |
Lsi11g00825 | 650 | Gene3D | Actin; Chain A, domain 4 | 235 | 318 | - | - | |
Lsi11g00825 | 650 | SUPERFAMILY | Heat shock protein 70kD (HSP70), C-terminal subdomain | 543 | 623 | IPR029048 | - | |
Lsi11g00825 | 650 | Gene3D | - | 71 | 126 | - | - | |
Lsi11g00825 | 650 | Gene3D | - | 10 | 384 | - | - | |
Lsi11g00825 | 650 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED | 1 | 625 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01652 | Lsi-Chr2:22326465 | Lsi11g00825 | Lsi-Chr11:10226844 | 1.08E-69 | dispersed | |
Lsi02g01657 | Lsi-Chr2:22358510 | Lsi11g00825 | Lsi-Chr11:10226844 | 0 | dispersed | |
Lsi04g01203 | Lsi-Chr4:18571465 | Lsi11g00825 | Lsi-Chr11:10226844 | 6.94E-85 | dispersed | |
Lsi05g01597 | Lsi-Chr5:23711795 | Lsi11g00825 | Lsi-Chr11:10226844 | 1.25E-87 | dispersed | |
Lsi09g00168 | Lsi-Chr9:1751792 | Lsi11g00825 | Lsi-Chr11:10226844 | 0 | dispersed | |
Lsi09g01011 | Lsi-Chr9:13848300 | Lsi11g00825 | Lsi-Chr11:10226844 | 9.01E-180 | dispersed | |
Lsi11g00825 | Lsi-Chr11:10226844 | Lsi01g01415 | Lsi-Chr1:12295409 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00825 | K03283 | - | csv:101215564 | 1181.01 |