Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00826 ATGAAACGCTTAGTTTCTCCGTGTCAATTGCCAGCCATGGAAGCCAGCGCTGGACTAGTCGCTGGGTCTCACAATCGTAATGAGCTTGTTGTCATTCATGGCCATGAGGAGGTGATGAACTTAATCAGAAAGTGCAGTGGGAGAAAGTTTTGGTATCCAAAGCCGTTGAAGAACTTGGACGGTCAAGTTTGTGAGATCTGTGGTGATGAGGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGTGAAGCACAGAACAAAGGACTATGCAATGCAATAACTAGGAGTCCGAGGGTTGAGGGAGATGACGATGAAGAAGACGTAGATGACATTGAACACGAGTTCAACATTGATGATGAGAGGAACAACCATAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGCCCAGATGATGATGAAAATGCACAATACGGAAGAACACAGACAGCAAATGGTGAGCTCCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATATCCAGTTTCTGAACCAGGTAAATTTTCTCTACGCCATTGTTTTTGCATTAGCTACATGAAGTTTCATTTTCGTACGGTAGTTGATATGTTTTTAAAAAAACCAGGGAGTACAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGATTGATGCAGCCAGACAGCCACTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCATACCGGATGGTTATTGTAGCCAGGCTCGTTATTCTCGCCTTCTTCCTCCGATACCGGATTCTAAATCCAGTGCATGACGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACTTACTTGGATCGTCTATCCCTAAGGTATGAAAGAGAGGGTGAACCTAATTTGCTTGCTCCGGTAGACATTTTCGTCAGTACTGTGGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGATTATCCAGTTGATAAGATTTCATGCTACGTTTCGGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCAAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTGAAGGAGCGTCGAGCAATGAAGGTATCCAACTTTAACATATACACTAAGAAAGAGAGAGAATATGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCGTGAAAGTTCCTACAGAGGGATGGATAATGCAAGATGGAACACCGTGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTAGGTCACAGTGGAGGCCTTGATGCAGAAGGGAACGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAGGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAAGCTTTATATGGTTATGACCCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGATTGTTGTCCATGCTTTGGACGTCGGAAGAAGCTCAAGAACTCTAAAAGTGGGGTAGATGGAGATGTTGCAGTGCTGGAAGATGACAAGGAGCTACTGATGTCACAAATGAATTTCGAAAAGAAATTCGGACAGTCATCAATTTTTGTTACCTCTACTTTGATGGAAGAAGGCGGTGTTCCGCCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGGTAGACTTGGAACTGAAACTAGTGTCATGTTTGTGTTTGCAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGTTTCAAAATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGAGCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTTGGCTCTATTGAAATCTTTTTCAGCAACCACTGCCCTGTTTGGTATGGTTATAAGGGCGGGAAGCTAAAGTGGCTCGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGCACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTATTGGCTGGAATTGACACTAGCTTCACAGTTACATCCAAGGCAACAGATGATGAAGACTTTGGAGAATTATATGCCTTCAAATGGACAACCCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTAGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGGTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTTTGATGGGCCGACAAAACCGCACACCGACTATAGTTGTCATATGGTCTGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCGTTTGTGATGAAAACAAAGGGACCTGATACTAAGAAATGTGGACTAAATTGCTGA 3381 43.57 MKRLVSPCQLPAMEASAGLVAGSHNRNELVVIHGHEEVMNLIRKCSGRKFWYPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGEAQNKGLCNAITRSPRVEGDDDEEDVDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGPDDDENAQYGRTQTANGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGKFSLRHCFCISYMKFHFRTVVDMFLKKPGSTRWDEKREEGWKDRMDDWKLQQGNLGPEPDDANDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKVSNFNIYTKKEREYEEFKVRINAQVAKAVKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVSCDCCPCFGRRKKLKNSKSGVDGDVAVLEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTEVDLELKLVSCLCLQLGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10233152 10238738 + Lsi11G008260.1 Lsi11g00826 673993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00826 1126 Pfam Cellulose synthase 396 1120 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi11g00826 1126 Pfam Zinc-binding RING-finger 54 144 IPR027934 -
Lsi11g00826 1126 ProSiteProfiles Zinc finger RING-type profile. 64 110 IPR001841 -
Lsi11g00826 1126 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 47 1126 - -
Lsi11g00826 1126 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 47 1126 - -
Lsi11g00826 1126 SUPERFAMILY Nucleotide-diphospho-sugar transferases 409 950 IPR029044 -
Lsi11g00826 1126 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 521 698 IPR029044 -
Lsi11g00826 1126 SUPERFAMILY RING/U-box 51 145 - -
Lsi11g00826 1126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 149 IPR013083 -
Lsi11g00826 1126 CDD mRING-HC-C4C4_CesA_plant 62 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02141 Lsi-Chr4:28528236 Lsi11g00826 Lsi-Chr11:10233152 0 dispersed
Lsi08g00202 Lsi-Chr8:4295578 Lsi11g00826 Lsi-Chr11:10233152 0 dispersed
Lsi09g01795 Lsi-Chr9:26684478 Lsi11g00826 Lsi-Chr11:10233152 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00826 K10999 - csv:101214842 2045.4