Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00832 | ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCTAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCACACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGTCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCTCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGCGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAACGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGAATGGAATATGTTCATGGCCTTGGGTTGATTCACAGGGACTTGAAATCAGACAACCTTTTGATTTTTGCGGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGTCCTTGGTTTTTGATATGGCTCTGGCTGCTTCTTATATGTCGGATCAGGGGAGGAGATATGGCCCTCTCTGGACAGATGTGCTAATCCCATGTGAATGGGGTTGTCTTCTGGTGGTTTTGGCTCCCGGTGAAAGTTTATGGGCAGTATTGGAAGAAGTCATTCTAGATCTTTTGAGACCTAGGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTGTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAACATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAGGGAGTCCGTCCTATCATTCCCAACGACTGCTTACCTGTTTTGAGCGACATCATGACCAGGTGCTGGGATCCCAACCCTGATGTTAGGCCATCATTCACCGAGGTGGTTAGAATGCTTGAGAATGCACAGACTGAGATCATGACAACGGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA | 1425 | 46.18 | MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPSLVFDMALAASYMSDQGRRYGPLWTDVLIPCEWGCLLVVLAPGESLWAVLEEVILDLLRPREMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDPNPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD | 474 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10353365 | 10364325 | - | Lsi11G008320.1 | Lsi11g00832 | 673999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00832 | 474 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 2 | 305 | - | - | |
Lsi11g00832 | 474 | CDD | STKc_MAP3K-like | 139 | 447 | - | - | |
Lsi11g00832 | 474 | SMART | serkin_6 | 132 | 455 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00832 | 474 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 2 | 305 | - | - | |
Lsi11g00832 | 474 | Gene3D | Phosphorylase Kinase; domain 1 | 121 | 214 | - | - | |
Lsi11g00832 | 474 | SUPERFAMILY | Protein kinase-like (PK-like) | 130 | 450 | IPR011009 | - | |
Lsi11g00832 | 474 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 363 | 465 | - | - | |
Lsi11g00832 | 474 | ProSiteProfiles | Protein kinase domain profile. | 132 | 454 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g00832 | 474 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 363 | 465 | - | - | |
Lsi11g00832 | 474 | Pfam | Protein tyrosine and serine/threonine kinase | 133 | 308 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g00832 | 474 | Pfam | Protein tyrosine and serine/threonine kinase | 362 | 447 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g00832 | 474 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 254 | 266 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g00832 | 474 | Gene3D | Transferase(Phosphotransferase) domain 1 | 215 | 466 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01595 | Lsi-Chr6:26332348 | Lsi11g00832 | Lsi-Chr11:10353365 | 2.37E-68 | dispersed | |
Lsi11g00832 | Lsi-Chr11:10353365 | Lsi07g01075 | Lsi-Chr7:16102866 | 3.56E-58 | dispersed | |
Lsi11g01225 | Lsi-Chr11:20841418 | Lsi11g00832 | Lsi-Chr11:10353365 | 2.73E-26 | dispersed | |
Lsi11g00832 | Lsi-Chr11:10353365 | Lsi01g00311 | Lsi-Chr1:2761648 | 5.77E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84036 | PF07714 | PK_Tyr_Ser-Thr | 9.30E-38 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00832 | - | - | cann:107870865 | 634.409 |