Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00832 ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCTAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCACACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGTCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCTCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGCGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAACGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGAATGGAATATGTTCATGGCCTTGGGTTGATTCACAGGGACTTGAAATCAGACAACCTTTTGATTTTTGCGGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGTCCTTGGTTTTTGATATGGCTCTGGCTGCTTCTTATATGTCGGATCAGGGGAGGAGATATGGCCCTCTCTGGACAGATGTGCTAATCCCATGTGAATGGGGTTGTCTTCTGGTGGTTTTGGCTCCCGGTGAAAGTTTATGGGCAGTATTGGAAGAAGTCATTCTAGATCTTTTGAGACCTAGGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTGTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAACATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAGGGAGTCCGTCCTATCATTCCCAACGACTGCTTACCTGTTTTGAGCGACATCATGACCAGGTGCTGGGATCCCAACCCTGATGTTAGGCCATCATTCACCGAGGTGGTTAGAATGCTTGAGAATGCACAGACTGAGATCATGACAACGGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 1425 46.18 MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPSLVFDMALAASYMSDQGRRYGPLWTDVLIPCEWGCLLVVLAPGESLWAVLEEVILDLLRPREMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDPNPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10353365 10364325 - Lsi11G008320.1 Lsi11g00832 673999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00832 474 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 305 - -
Lsi11g00832 474 CDD STKc_MAP3K-like 139 447 - -
Lsi11g00832 474 SMART serkin_6 132 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00832 474 PANTHER SERINE-THREONINE PROTEIN KINASE 2 305 - -
Lsi11g00832 474 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Lsi11g00832 474 SUPERFAMILY Protein kinase-like (PK-like) 130 450 IPR011009 -
Lsi11g00832 474 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 363 465 - -
Lsi11g00832 474 ProSiteProfiles Protein kinase domain profile. 132 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00832 474 PANTHER SERINE-THREONINE PROTEIN KINASE 363 465 - -
Lsi11g00832 474 Pfam Protein tyrosine and serine/threonine kinase 133 308 IPR001245 GO:0004672|GO:0006468
Lsi11g00832 474 Pfam Protein tyrosine and serine/threonine kinase 362 447 IPR001245 GO:0004672|GO:0006468
Lsi11g00832 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Lsi11g00832 474 Gene3D Transferase(Phosphotransferase) domain 1 215 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01595 Lsi-Chr6:26332348 Lsi11g00832 Lsi-Chr11:10353365 2.37E-68 dispersed
Lsi11g00832 Lsi-Chr11:10353365 Lsi07g01075 Lsi-Chr7:16102866 3.56E-58 dispersed
Lsi11g01225 Lsi-Chr11:20841418 Lsi11g00832 Lsi-Chr11:10353365 2.73E-26 dispersed
Lsi11g00832 Lsi-Chr11:10353365 Lsi01g00311 Lsi-Chr1:2761648 5.77E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84036 PF07714 PK_Tyr_Ser-Thr 9.30E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00832 - - cann:107870865 634.409