Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00839 ATGATAAGGAGGAATTGGAAGATGGCATCGAGTTCCTCGAATTCGCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAATCGGAATGTGTTTTTGCTCCGTATTTTCCGCCGGATCAGCCACAGAAATTCGCTAATGTTCATAAGGTATTCGGAGCCAGCAATGTTACAAAACTTCTGAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCCCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCTGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCTCTGATTTCACCGCCTTCCGCCGTTTCCACCGTCGCTCATGGACAGCGGAACCACCGGCCGGCGTTCAATTTCGCTCGAGATCAACCGCATAGCCTCTACCACGATCAATTTTTCCCTCGAGATCAACAACAGCAACAGATGATGATCCGACGGAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCCGTCAACGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAAACTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 678 51.77 MIRRNWKMASSSSNSPCAACKFLRRKCQSECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSAVSTVAHGQRNHRPAFNFARDQPHSLYHDQFFPRDQQQQQMMIRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10483445 10484279 + Lsi11G008390.1 Lsi11g00839 674006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00839 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 9 190 - -
Lsi11g00839 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 190 - -
Lsi11g00839 225 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Lsi11g00839 225 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00402 Lsi-Chr2:3394358 Lsi11g00839 Lsi-Chr11:10483445 4.87E-49 dispersed
Lsi10g00093 Lsi-Chr10:1510738 Lsi11g00839 Lsi-Chr11:10483445 7.11E-20 dispersed
Lsi10g00645 Lsi-Chr10:9014651 Lsi11g00839 Lsi-Chr11:10483445 3.02E-60 dispersed
Lsi11g00839 Lsi-Chr11:10483445 Lsi06g01582 Lsi-Chr6:26226856 7.34E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26168 PF03195 LOB 9.50E-43 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00839 - - csv:101203281 410.609