Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00839 | ATGATAAGGAGGAATTGGAAGATGGCATCGAGTTCCTCGAATTCGCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAATCGGAATGTGTTTTTGCTCCGTATTTTCCGCCGGATCAGCCACAGAAATTCGCTAATGTTCATAAGGTATTCGGAGCCAGCAATGTTACAAAACTTCTGAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCCCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCTGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCTCTGATTTCACCGCCTTCCGCCGTTTCCACCGTCGCTCATGGACAGCGGAACCACCGGCCGGCGTTCAATTTCGCTCGAGATCAACCGCATAGCCTCTACCACGATCAATTTTTCCCTCGAGATCAACAACAGCAACAGATGATGATCCGACGGAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCCGTCAACGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAAACTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG | 678 | 51.77 | MIRRNWKMASSSSNSPCAACKFLRRKCQSECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSAVSTVAHGQRNHRPAFNFARDQPHSLYHDQFFPRDQQQQQMMIRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQTRAAAGDDRRGTLDHS | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10483445 | 10484279 | + | Lsi11G008390.1 | Lsi11g00839 | 674006 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00839 | 225 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 6-LIKE | 9 | 190 | - | - | |
Lsi11g00839 | 225 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 9 | 190 | - | - | |
Lsi11g00839 | 225 | ProSiteProfiles | LOB domain profile. | 15 | 116 | IPR004883 | - | |
Lsi11g00839 | 225 | Pfam | Lateral organ boundaries (LOB) domain | 16 | 113 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00402 | Lsi-Chr2:3394358 | Lsi11g00839 | Lsi-Chr11:10483445 | 4.87E-49 | dispersed | |
Lsi10g00093 | Lsi-Chr10:1510738 | Lsi11g00839 | Lsi-Chr11:10483445 | 7.11E-20 | dispersed | |
Lsi10g00645 | Lsi-Chr10:9014651 | Lsi11g00839 | Lsi-Chr11:10483445 | 3.02E-60 | dispersed | |
Lsi11g00839 | Lsi-Chr11:10483445 | Lsi06g01582 | Lsi-Chr6:26226856 | 7.34E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26168 | PF03195 | LOB | 9.50E-43 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00839 | - | - | csv:101203281 | 410.609 |