Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00906 ATGTCCACTCTTTCTTGCCAACCTTCCGATTTGGTGCCACTCCTTGGCTCATCAGCCACCACCAATTCCACCGCCATAGCCGAGTTCTTATGCTCAAGATTCACCACCATAGCCACCACTTTCAGCTCCACCACCTATGCCGTCGACAACACCTACCTCCTCTTTTCTGCCTACCTCGTCTTCGCCATGCAGCTCGGCTTTGCCATGCTTTGCGCTGGCTCGGTCCGTGCCAAAAACACGATGAATATCATGCTCACCAACGTCCTCGACGCCGCTGCCGGTGGCCTCTCTTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGCATCACCAGTGGCTCCATAGCTGAGCGAACCCAATTTGTTGCCTATCTAATCTACTCCACTATTCTAACTGGCTTCATCTACCCTATAGTCTCCCACTGGTTCTGGTCTGCTGACGGGTGGGCCAGCCCAACCCGACCCGATAACCTCATATTCAACTCAGGTGCGATCGACTTCGCCGGGTCCGGTGTGGTCCACATGGTTGGTGGAATAGCTGGTCTCTGGGGAGCTTTAATCGAAGGCCCTCGGATTGGTCGGTTCGATCGATCAGGTCGATCTGTCGCCCTTCGCGGCCACAGCGCATCACTTGTAGTTCTTGGCTCTTTCCTCCTTTGGTTTGGTTGGTACGGATTTAATCCCGGCTCATTCTTAACAATCTCCAAATCCTACAATGACGGTCGTCCTTACTACGGCCAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCCGGATGCACAGCTGCCTTAACAACCCTCTTCGCAAAACGCCTATTAGTCGGGCATTGGAACGTAATCGACGTGTGTAATGGTCTGTTAGGCGGGTTTGCCGCCATCACATCGGGTTGCGCCGTGGTCGAGCCATGGGCGGCAGTGATATGTGGTTTCGTAGCATCATGGGTGTTAATTGGATTAAACAAGCTAGCCGAGAAGGTAAGCTACGACGACCCATTAGAGGCGGCGCAATTGCACGGCGGGTGTGGGGCATGGGGTTTAATATTCACAGGATTATTCGCAACAAAGAAATACGTCGGTGAGGTATATGAAGTCGGGCGGCCGTTCGGATTGTTGATGGGCGGCGGAGGGAAGCTGCTGGCAGCGCAGGTGGTGGAGATAGTAGCGATAATAGGGTGGGTGTCAGTAACAATGGGGGGTTTGTTTTATGGGCTGAAGAAAGTGAAACTATTAAGAATATCAAGAGAGGATGAAATGGCAGGGATGGATTTGACAAGGCATGGGGGATTTGCTTATGTATATAATGATGAGGAAGATCTATCAGAGAAGCCTTCTGGGTTTATGATGAGGAGGATTGAGCCCACTGATGCTAGTTCTCCTGAGGAGAATACTTCTTCTGGGATGGGGGCTGTTTGA 1419 51.87 MSTLSCQPSDLVPLLGSSATTNSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGITSGSIAERTQFVAYLIYSTILTGFIYPIVSHWFWSADGWASPTRPDNLIFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFAKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLIGLNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFATKKYVGEVYEVGRPFGLLMGGGGKLLAAQVVEIVAIIGWVSVTMGGLFYGLKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEEDLSEKPSGFMMRRIEPTDASSPEENTSSGMGAV 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12298731 12301001 - Lsi11G009060.1 Lsi11g00906 674073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00906 472 Gene3D Ammonium transporter AmtB like domains 110 449 IPR029020 -
Lsi11g00906 472 Gene3D Ammonium transporter AmtB like domains 31 109 IPR029020 -
Lsi11g00906 472 TIGRFAM amt: ammonium transporter 104 433 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi11g00906 472 ProSitePatterns Ammonium transporters signature. 165 190 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lsi11g00906 472 SUPERFAMILY Ammonium transporter 46 414 - -
Lsi11g00906 472 Pfam Ammonium Transporter Family 52 108 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi11g00906 472 Pfam Ammonium Transporter Family 104 433 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi11g00906 472 PANTHER AMMONIUM TRANSPORTER 106 462 - -
Lsi11g00906 472 PANTHER AMMONIUM TRANSPORTER 5 108 - -
Lsi11g00906 472 PANTHER AMMONIUM TRANSPORTER 106 462 - -
Lsi11g00906 472 PANTHER AMMONIUM TRANSPORTER 5 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00906 Lsi-Chr11:12298731 Lsi11g00907 Lsi-Chr11:12336294 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00906 K03320 K07573 csv:101217871 859.751