Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00906 | ATGTCCACTCTTTCTTGCCAACCTTCCGATTTGGTGCCACTCCTTGGCTCATCAGCCACCACCAATTCCACCGCCATAGCCGAGTTCTTATGCTCAAGATTCACCACCATAGCCACCACTTTCAGCTCCACCACCTATGCCGTCGACAACACCTACCTCCTCTTTTCTGCCTACCTCGTCTTCGCCATGCAGCTCGGCTTTGCCATGCTTTGCGCTGGCTCGGTCCGTGCCAAAAACACGATGAATATCATGCTCACCAACGTCCTCGACGCCGCTGCCGGTGGCCTCTCTTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGCATCACCAGTGGCTCCATAGCTGAGCGAACCCAATTTGTTGCCTATCTAATCTACTCCACTATTCTAACTGGCTTCATCTACCCTATAGTCTCCCACTGGTTCTGGTCTGCTGACGGGTGGGCCAGCCCAACCCGACCCGATAACCTCATATTCAACTCAGGTGCGATCGACTTCGCCGGGTCCGGTGTGGTCCACATGGTTGGTGGAATAGCTGGTCTCTGGGGAGCTTTAATCGAAGGCCCTCGGATTGGTCGGTTCGATCGATCAGGTCGATCTGTCGCCCTTCGCGGCCACAGCGCATCACTTGTAGTTCTTGGCTCTTTCCTCCTTTGGTTTGGTTGGTACGGATTTAATCCCGGCTCATTCTTAACAATCTCCAAATCCTACAATGACGGTCGTCCTTACTACGGCCAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCCGGATGCACAGCTGCCTTAACAACCCTCTTCGCAAAACGCCTATTAGTCGGGCATTGGAACGTAATCGACGTGTGTAATGGTCTGTTAGGCGGGTTTGCCGCCATCACATCGGGTTGCGCCGTGGTCGAGCCATGGGCGGCAGTGATATGTGGTTTCGTAGCATCATGGGTGTTAATTGGATTAAACAAGCTAGCCGAGAAGGTAAGCTACGACGACCCATTAGAGGCGGCGCAATTGCACGGCGGGTGTGGGGCATGGGGTTTAATATTCACAGGATTATTCGCAACAAAGAAATACGTCGGTGAGGTATATGAAGTCGGGCGGCCGTTCGGATTGTTGATGGGCGGCGGAGGGAAGCTGCTGGCAGCGCAGGTGGTGGAGATAGTAGCGATAATAGGGTGGGTGTCAGTAACAATGGGGGGTTTGTTTTATGGGCTGAAGAAAGTGAAACTATTAAGAATATCAAGAGAGGATGAAATGGCAGGGATGGATTTGACAAGGCATGGGGGATTTGCTTATGTATATAATGATGAGGAAGATCTATCAGAGAAGCCTTCTGGGTTTATGATGAGGAGGATTGAGCCCACTGATGCTAGTTCTCCTGAGGAGAATACTTCTTCTGGGATGGGGGCTGTTTGA | 1419 | 51.87 | MSTLSCQPSDLVPLLGSSATTNSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGITSGSIAERTQFVAYLIYSTILTGFIYPIVSHWFWSADGWASPTRPDNLIFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFAKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLIGLNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFATKKYVGEVYEVGRPFGLLMGGGGKLLAAQVVEIVAIIGWVSVTMGGLFYGLKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEEDLSEKPSGFMMRRIEPTDASSPEENTSSGMGAV | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12298731 | 12301001 | - | Lsi11G009060.1 | Lsi11g00906 | 674073 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00906 | 472 | Gene3D | Ammonium transporter AmtB like domains | 110 | 449 | IPR029020 | - | |
Lsi11g00906 | 472 | Gene3D | Ammonium transporter AmtB like domains | 31 | 109 | IPR029020 | - | |
Lsi11g00906 | 472 | TIGRFAM | amt: ammonium transporter | 104 | 433 | IPR001905 | GO:0008519|GO:0016020|GO:0072488 | |
Lsi11g00906 | 472 | ProSitePatterns | Ammonium transporters signature. | 165 | 190 | IPR018047 | GO:0008519|GO:0016020|GO:0072488 | |
Lsi11g00906 | 472 | SUPERFAMILY | Ammonium transporter | 46 | 414 | - | - | |
Lsi11g00906 | 472 | Pfam | Ammonium Transporter Family | 52 | 108 | IPR024041 | GO:0008519|GO:0016020|GO:0072488 | |
Lsi11g00906 | 472 | Pfam | Ammonium Transporter Family | 104 | 433 | IPR024041 | GO:0008519|GO:0016020|GO:0072488 | |
Lsi11g00906 | 472 | PANTHER | AMMONIUM TRANSPORTER | 106 | 462 | - | - | |
Lsi11g00906 | 472 | PANTHER | AMMONIUM TRANSPORTER | 5 | 108 | - | - | |
Lsi11g00906 | 472 | PANTHER | AMMONIUM TRANSPORTER | 106 | 462 | - | - | |
Lsi11g00906 | 472 | PANTHER | AMMONIUM TRANSPORTER | 5 | 108 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi11g00906 | Lsi-Chr11:12298731 | Lsi11g00907 | Lsi-Chr11:12336294 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00906 | K03320 | K07573 | csv:101217871 | 859.751 |