Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00907 ATGGCCACTCTTTCTTGCCAACCTTCCGATTTGGTACCCCTTCTCGGCTCAGCAACCACCGCGAACTCCACGGCCATAGCCGAGTTCCTATGCTCAAGATTCACCACCATAGCCACCACTATCAGCTCCACCACCTACGCCATCGACAACACCTATCTCCTCTTCTCGGCCTACCTCGTCTTTGCCATGCAGCTCGGCTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACGATGAACATCATGCTTACCAACGTCCTCGATGCCGCCGCGGGTGGCCTCTCTTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGGCCTCTCCAATTTCCCAAACCCCTCTACTGATTATAGCTTCTTTCTCTATCAATGGGCCTTTGCTATTGCTGCTGCAGGTATCACTAGTGGTTCTATTGCTGAGCGAACTCAATTCGTCGCGTATCTCATCTATTCCAGCATCCTTACGGGCTTCGTCTATCCCATAGTCTCCCATTGGTTTTGGTCTGCCGATGGGTGGGCCAGTCCAAGTCGACCTAGTAACCTTCTATTTAATTCAGGGGCAATTGACTTTGCCGGATCAGGCGTGGTCCATATGGTTGGTGGCATAGCCGGCCTCTGGGGTGCTTTAATCGAAGGCCCTCGAATTGGCCGGTTCGATCGATCTGGTCGATCTGTAGCCCTTCGTGGCCATAGCGCCTCCTTAGTAGTTCTTGGCTCATTCCTCCTTTGGTTCGGATGGTACGGGTTCAACCCAGGCTCATTCCTAACAATCTCCAAATCATATAATGACGGTCGTCCTTTCTATGGTCAATGGAGTGCCATAGGTCGAACTGGAGTCACCACGACACTAGCTGGATGCACAGCTGCGTTAACAACCCTCTTTACAAAACGTTTATTAGTTGGCCATTGGAACGTAATCGATGTATGCAATGGACTATTAGGTGGATTTGCTGCCATCACGTCCGGTTGCGCCGTTGTCGAGCCATGGGCTGCGGTGATATGTGGATTTGTAGCATCCTGGGTGTTAACAGGCTTCAACAAGCTAGCTGAGAAGTTCAACTATGATGACCCATTAGAGGCGGCACAACTGCACGGCGGGTGTGGGGCATGGGGCTTGATATTCACGGGATTATTTGCAAGAAAGGAGTATGTAGCAGAGGTTTACCAAGCCGGACGTCCATATGGGTTGTTGATGGGCGGCGGAGGGAGATTGTTGGCAGCGCAGTTGGTAGAGATAATGGCGATAATTGGGTGGGTTTCTGTAACAATGGGGGGTTTGTTTTACGGGTTGAAGAAGGTGAACTTGTTGAGGATATCAAGGGAAGATGAGATGGCGGGGATGGATTTAACAAGGCATGGAGGATTTGCTTATGTATATAATGACGAGGAGGATCCGTCTGGGAAGCCATCTGGATTTATGATGAGGCGAATTGAACCTGCTAACGAGACTCCTCCTCAGGATCATTTTCCTTCAGGGATGGTAGCTGTTTGA 1536 50.72 MATLSCQPSDLVPLLGSATTANSTAIAEFLCSRFTTIATTISSTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSADGWASPSRPSNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPFYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLTGFNKLAEKFNYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYQAGRPYGLLMGGGGRLLAAQLVEIMAIIGWVSVTMGGLFYGLKKVNLLRISREDEMAGMDLTRHGGFAYVYNDEEDPSGKPSGFMMRRIEPANETPPQDHFPSGMVAV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12336294 12338663 - Lsi11G009070.1 Lsi11g00907 674074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00907 511 PANTHER AMMONIUM TRANSPORTER 5 502 - -
Lsi11g00907 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi11g00907 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lsi11g00907 511 SUPERFAMILY Ammonium transporter 46 453 - -
Lsi11g00907 511 PANTHER AMMONIUM TRANSPORTER 5 502 - -
Lsi11g00907 511 TIGRFAM amt: ammonium transporter 49 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi11g00907 511 Gene3D Ammonium transporter AmtB like domains 30 485 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01060 Lsi-Chr5:18115979 Lsi11g00907 Lsi-Chr11:12336294 0 dispersed
Lsi08g01170 Lsi-Chr8:20318908 Lsi11g00907 Lsi-Chr11:12336294 8.62E-21 dispersed
Lsi09g01170 Lsi-Chr9:18944306 Lsi11g00907 Lsi-Chr11:12336294 0 dispersed
Lsi11g00906 Lsi-Chr11:12298731 Lsi11g00907 Lsi-Chr11:12336294 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00907 K03320 K07573 csv:101222356 933.71