Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00931 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACAACAGCGACAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCTAGCATCTTGCTCCGATATTACAACTGTTATTACACCACAATATTAATGCATTCACTTCATGCCCAGTTTCATGTTCTAAATTTTGGGGATTCTACAACGATCTTGCTTTGCAGGAGTGTTAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTTCTTGTGGCCATCCATTCTGCAATGCATGTTGGACAGGTTATATTAGCACATCTATCAATGATGGCCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAACTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGACCGATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGAACAGGAGGATTCTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATAACGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAGGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAATCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCCGATGGTCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTTGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGATGTGGATTCCCATGGTACCTGCAGCAAAACAGCAAGCTCAAAGAGTACCGGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGCCGAAACATTGATGATTCTGACCATTGGTCTTGTGAACATTGCACCTTTGCAAATGTTAAGTCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 1878 43.77 MESEDELDMHDAHDDDDSVDNEEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNCYYTTILMHSLHAQFHVLNFGDSTTILLCRSVSKVHDEWFADEEKVRRSVGLLEKPVLRHSNELELPCGICFEIYSRDKIQSASCGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYNDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLERLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTASSKSTGGCRSKGGKGKMSAFRASGSSRNIDDSDHWSCEHCTFANVKSATFCQMCQQRR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13382397 13460151 - Lsi11G009310.1 Lsi11g00931 674098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00931 625 ProSiteProfiles Zinc finger RING-type profile. 174 218 IPR001841 -
Lsi11g00931 625 MobiDBLite consensus disorder prediction 1 57 - -
Lsi11g00931 625 ProSiteProfiles Zinc finger RanBP2 type profile. 598 625 IPR001876 -
Lsi11g00931 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 255 IPR013083 -
Lsi11g00931 625 Pfam IBR domain, a half RING-finger domain 322 370 IPR002867 -
Lsi11g00931 625 Pfam IBR domain, a half RING-finger domain 243 305 IPR002867 -
Lsi11g00931 625 CDD RING-HC_RBR_TRIAD1_like 174 224 - -
Lsi11g00931 625 ProSiteProfiles TRIAD supradomain profile. 170 383 IPR044066 -
Lsi11g00931 625 MobiDBLite consensus disorder prediction 1 55 - -
Lsi11g00931 625 SUPERFAMILY Ran binding protein zinc finger-like 598 625 IPR036443 -
Lsi11g00931 625 SUPERFAMILY RING/U-box 244 312 - -
Lsi11g00931 625 SUPERFAMILY RING/U-box 324 372 - -
Lsi11g00931 625 SUPERFAMILY RING/U-box 171 252 - -
Lsi11g00931 625 SMART zf_4 600 624 IPR001876 -
Lsi11g00931 625 Gene3D - 301 557 - -
Lsi11g00931 625 SMART ibrneu5 243 305 IPR002867 -
Lsi11g00931 625 SMART ibrneu5 309 379 IPR002867 -
Lsi11g00931 625 MobiDBLite consensus disorder prediction 560 575 - -
Lsi11g00931 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 30 107 - -
Lsi11g00931 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 136 573 - -
Lsi11g00931 625 MobiDBLite consensus disorder prediction 560 597 - -
Lsi11g00931 625 Pfam Ariadne domain 392 558 IPR045840 -
Lsi11g00931 625 ProSitePatterns Zinc finger RanBP2-type signature. 602 621 IPR001876 -
Lsi11g00931 625 Gene3D - 597 625 - -
Lsi11g00931 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 107 IPR031127 GO:0004842|GO:0016567
Lsi11g00931 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 136 573 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00360 Lsi-Chr8:9845857 Lsi11g00931 Lsi-Chr11:13382397 0 dispersed
Lsi10g00340 Lsi-Chr10:5354460 Lsi11g00931 Lsi-Chr11:13382397 2.73E-51 dispersed
Lsi11g00931 Lsi-Chr11:13382397 Lsi05g00815 Lsi-Chr5:12642139 2.15E-10 dispersed
Lsi11g00931 Lsi-Chr11:13382397 Lsi02g01443 Lsi-Chr2:20110933 3.93E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00931 K11968 - csv:101218052 1151.35