Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g00931 | ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACAACAGCGACAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCTAGCATCTTGCTCCGATATTACAACTGTTATTACACCACAATATTAATGCATTCACTTCATGCCCAGTTTCATGTTCTAAATTTTGGGGATTCTACAACGATCTTGCTTTGCAGGAGTGTTAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTTCTTGTGGCCATCCATTCTGCAATGCATGTTGGACAGGTTATATTAGCACATCTATCAATGATGGCCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAACTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGACCGATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGAACAGGAGGATTCTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATAACGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAGGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAATCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCCGATGGTCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTTGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGATGTGGATTCCCATGGTACCTGCAGCAAAACAGCAAGCTCAAAGAGTACCGGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGCCGAAACATTGATGATTCTGACCATTGGTCTTGTGAACATTGCACCTTTGCAAATGTTAAGTCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA | 1878 | 43.77 | MESEDELDMHDAHDDDDSVDNEEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNCYYTTILMHSLHAQFHVLNFGDSTTILLCRSVSKVHDEWFADEEKVRRSVGLLEKPVLRHSNELELPCGICFEIYSRDKIQSASCGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYNDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLERLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTASSKSTGGCRSKGGKGKMSAFRASGSSRNIDDSDHWSCEHCTFANVKSATFCQMCQQRR | 625 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13382397 | 13460151 | - | Lsi11G009310.1 | Lsi11g00931 | 674098 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g00931 | 625 | ProSiteProfiles | Zinc finger RING-type profile. | 174 | 218 | IPR001841 | - | |
Lsi11g00931 | 625 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Lsi11g00931 | 625 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 598 | 625 | IPR001876 | - | |
Lsi11g00931 | 625 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 255 | IPR013083 | - | |
Lsi11g00931 | 625 | Pfam | IBR domain, a half RING-finger domain | 322 | 370 | IPR002867 | - | |
Lsi11g00931 | 625 | Pfam | IBR domain, a half RING-finger domain | 243 | 305 | IPR002867 | - | |
Lsi11g00931 | 625 | CDD | RING-HC_RBR_TRIAD1_like | 174 | 224 | - | - | |
Lsi11g00931 | 625 | ProSiteProfiles | TRIAD supradomain profile. | 170 | 383 | IPR044066 | - | |
Lsi11g00931 | 625 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Lsi11g00931 | 625 | SUPERFAMILY | Ran binding protein zinc finger-like | 598 | 625 | IPR036443 | - | |
Lsi11g00931 | 625 | SUPERFAMILY | RING/U-box | 244 | 312 | - | - | |
Lsi11g00931 | 625 | SUPERFAMILY | RING/U-box | 324 | 372 | - | - | |
Lsi11g00931 | 625 | SUPERFAMILY | RING/U-box | 171 | 252 | - | - | |
Lsi11g00931 | 625 | SMART | zf_4 | 600 | 624 | IPR001876 | - | |
Lsi11g00931 | 625 | Gene3D | - | 301 | 557 | - | - | |
Lsi11g00931 | 625 | SMART | ibrneu5 | 243 | 305 | IPR002867 | - | |
Lsi11g00931 | 625 | SMART | ibrneu5 | 309 | 379 | IPR002867 | - | |
Lsi11g00931 | 625 | MobiDBLite | consensus disorder prediction | 560 | 575 | - | - | |
Lsi11g00931 | 625 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 30 | 107 | - | - | |
Lsi11g00931 | 625 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 136 | 573 | - | - | |
Lsi11g00931 | 625 | MobiDBLite | consensus disorder prediction | 560 | 597 | - | - | |
Lsi11g00931 | 625 | Pfam | Ariadne domain | 392 | 558 | IPR045840 | - | |
Lsi11g00931 | 625 | ProSitePatterns | Zinc finger RanBP2-type signature. | 602 | 621 | IPR001876 | - | |
Lsi11g00931 | 625 | Gene3D | - | 597 | 625 | - | - | |
Lsi11g00931 | 625 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 30 | 107 | IPR031127 | GO:0004842|GO:0016567 | |
Lsi11g00931 | 625 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 136 | 573 | IPR031127 | GO:0004842|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g00360 | Lsi-Chr8:9845857 | Lsi11g00931 | Lsi-Chr11:13382397 | 0 | dispersed | |
Lsi10g00340 | Lsi-Chr10:5354460 | Lsi11g00931 | Lsi-Chr11:13382397 | 2.73E-51 | dispersed | |
Lsi11g00931 | Lsi-Chr11:13382397 | Lsi05g00815 | Lsi-Chr5:12642139 | 2.15E-10 | dispersed | |
Lsi11g00931 | Lsi-Chr11:13382397 | Lsi02g01443 | Lsi-Chr2:20110933 | 3.93E-08 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g00931 | K11968 | - | csv:101218052 | 1151.35 |