Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00931 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACAACAGCGACAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCTAGCATCTTGCTCCGATATTACAACTGTTATTACACCACAATATTAATGCATTCACTTCATGCCCAGTTTCATGTTCTAAATTTTGGGGATTCTACAACGATCTTGCTTTGCAGGAGTGTTAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTTCTTGTGGCCATCCATTCTGCAATGCATGTTGGACAGGTTATATTAGCACATCTATCAATGATGGCCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAACTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGACCGATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGAACAGGAGGATTCTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATAACGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTGCATCTGGAAAGGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAATCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCCGATGGTCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTTGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGATGTGGATTCCCATGGTACCTGCAGCAAAACAGCAAGCTCAAAGAGTACCGGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGCCGAAACATTGATGATTCTGACCATTGGTCTTGTGAACATTGCACCTTTGCAAATGTTAAGTCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 1878 43.77 MESEDELDMHDAHDDDDSVDNEEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNCYYTTILMHSLHAQFHVLNFGDSTTILLCRSVSKVHDEWFADEEKVRRSVGLLEKPVLRHSNELELPCGICFEIYSRDKIQSASCGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYNDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLERLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTASSKSTGGCRSKGGKGKMSAFRASGSSRNIDDSDHWSCEHCTFANVKSATFCQMCQQRR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13382397 13460151 - Lsi11G009310.1 Lsi11g00931 674098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00931 625 ProSiteProfiles Zinc finger RING-type profile. 174 218 IPR001841 -
Lsi11g00931 625 MobiDBLite consensus disorder prediction 1 57 - -
Lsi11g00931 625 ProSiteProfiles Zinc finger RanBP2 type profile. 598 625 IPR001876 -
Lsi11g00931 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 255 IPR013083 -
Lsi11g00931 625 Pfam IBR domain, a half RING-finger domain 322 370 IPR002867 -
Lsi11g00931 625 Pfam IBR domain, a half RING-finger domain 243 305 IPR002867 -
Lsi11g00931 625 CDD RING-HC_RBR_TRIAD1_like 174 224 - -
Lsi11g00931 625 ProSiteProfiles TRIAD supradomain profile. 170 383 IPR044066 -
Lsi11g00931 625 MobiDBLite consensus disorder prediction 1 55 - -
Lsi11g00931 625 SUPERFAMILY Ran binding protein zinc finger-like 598 625 IPR036443 -
Lsi11g00931 625 SUPERFAMILY RING/U-box 244 312 - -
Lsi11g00931 625 SUPERFAMILY RING/U-box 324 372 - -
Lsi11g00931 625 SUPERFAMILY RING/U-box 171 252 - -
Lsi11g00931 625 SMART zf_4 600 624 IPR001876 -
Lsi11g00931 625 Gene3D - 301 557 - -
Lsi11g00931 625 SMART ibrneu5 243 305 IPR002867 -
Lsi11g00931 625 SMART ibrneu5 309 379 IPR002867 -
Lsi11g00931 625 MobiDBLite consensus disorder prediction 560 575 - -
Lsi11g00931 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 30 107 - -
Lsi11g00931 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 136 573 - -
Lsi11g00931 625 MobiDBLite consensus disorder prediction 560 597 - -
Lsi11g00931 625 Pfam Ariadne domain 392 558 IPR045840 -
Lsi11g00931 625 ProSitePatterns Zinc finger RanBP2-type signature. 602 621 IPR001876 -
Lsi11g00931 625 Gene3D - 597 625 - -
Lsi11g00931 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 107 IPR031127 GO:0004842|GO:0016567
Lsi11g00931 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 136 573 IPR031127 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00931 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 1151.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00360 Lsi-Chr8:9845857 Lsi11g00931 Lsi-Chr11:13382397 0 dispersed
Lsi10g00340 Lsi-Chr10:5354460 Lsi11g00931 Lsi-Chr11:13382397 2.73E-51 dispersed
Lsi11g00931 Lsi-Chr11:13382397 Lsi05g00815 Lsi-Chr5:12642139 2.15E-10 dispersed
Lsi11g00931 Lsi-Chr11:13382397 Lsi02g01443 Lsi-Chr2:20110933 3.93E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00340 . 294 719 ARIADNE family AT4G34370 72.0 3.8e-183 637.9
Lsi10g00340 . 188 672 ARIADNE family AT2G16090 77.0 1.0e-224 776.2
Lsi10g00340 . 168 673 ARIADNE family AT3G27710 61.4 1.8e-182 636.0
Lsi10g00340 . 174 652 ARIADNE family AT3G27720 53.8 2.9e-142 502.3
Lsi11g00931 . 1 570 ARIADNE family AT1G05890 60.8 5.8e-214 740.7
Lsi08g00360 . 86 512 ARIADNE family AT1G05890 76.1 1.3e-202 703.0
Lsi11g00931 . 19 625 ARIADNE family AT1G65430 69.7 7.1e-254 873.2
Lsi08g00360 . 16 572 ARIADNE family AT1G65430 65.1 3.0e-220 761.5
Lsi11g00931 . 13 488 ARIADNE family AT2G31780 52.0 1.0e-143 506.9
Lsi08g00360 . 51 437 ARIADNE family AT2G31780 55.0 2.5e-129 459.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00931 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0