Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00935 ATGCATGGAGCTTCACCATTTCCATTCATTTCTAACCCAAAAAAGCAAATTAAAATTGAAACCCCTTCTCTCCTTCATTATTCATTCATTATTGCTATATATACCTTCATTTTCATATCATATATCCTTCCCAAAATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCCGCCGCCGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCCTATGGTGTTTATGAACCCTTCAACCGCAATAATCACTCTCAAGATTGGAATAGTACTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGACCTTCCATCTGAGGCCAGCGGCGGCGGCAGCGGTGGTGGAAAACCCAACGCCGGGAACGGAAACGGCAACAACAGTAGCTCTATTGGGTTGTCTATGATCAAGACATGGCTGAGAAATCAACCGGCGCCGCCGCAAGCGGTGGCCAAGAGCGGCGGAGATCACGACGGCGCAGTTGGAATAGGTAATAATATCACAAGCGCACATACTTTATCACTGTCGATGAACACCGGTCCCCCACCGCCGTCCCACTCCTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAATGGCGGCGAAAGCTCCTCCTCCGATAACAAACAAGGCAAATCAACCACTGCAGAGCTCGACGCTGAAAACGGCGCCGTTGAAGCTGTCCCGAGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGCATAGATGGACAGGAAGATATGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCAATTTACCGCGGAGTAACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACTCAAGAGGAAGCAGCCGAAGCATATGACATAGCAGCCATAAAGTTTAGAGGACTAAATGCAGTGACCAACTTTGACATGAGTCGTTACGATGTGAAAGCCATCCTTGAAAGCAACACATTGCCCATCGGTGGCGCCGCCAAGCGCTTAAAAGACATCGACCACTCCGACATCCCCCTCGACCCCCAACGAACAGACGACAACATAACATCACACCTCTCTGATGGAATAATAACTGCTACCACTGCTCCGTACAGCGGCGGTGGATGGCCTACTCTCGCCTTCCACCACCACCACCCTTACGCCTTCCACTACCCCTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACCACTGCCATCGCCGTCGACAACTTCTTCCCACACGGTGGGGCTATGGACTCAATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGTGGTGCTAACGGAGATGGGTATAGTGGGAACTTCTTGATTCCGATGGGAGCGGTAGGGGCGGAAGGGAGCAGCAGCAGCAACAACAACAACGGCGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTGGTTGTTCTAACGTGGATGATCCATACCATGCAACAAGAACGACCAATTTGTATAATTATCATAACTCCTCTCATCAGTTGCAACCGCCACCGCTGTCATCGGGGTTGCAAAGCTCTAGCTGCAACAACTGGCTTCCTCCGGCGAGGTCGGTTTGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG 2019 50.62 MHGASPFPFISNPKKQIKIETPSLLHYSFIIAIYTFIFISYILPKMGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSTMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAVYTNASANYMFQNCSLDLPSEASGGGSGGGKPNAGNGNGNNSSSIGLSMIKTWLRNQPAPPQAVAKSGGDHDGAVGIGNNITSAHTLSLSMNTGPPPPSHSSSGSAALPLLTANGGESSSSDNKQGKSTTAELDAENGAVEAVPRKSVDTFGQRTSIYRGIDGQEDMKLISGTIVAEEKDRLEKEDKSIWISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDNITSHLSDGIITATTAPYSGGGWPTLAFHHHHPYAFHYPYATPQQRLWCKQEHDTTAIAVDNFFPHGGAMDSMDHSSGSSSVVYSGANGDGYSGNFLIPMGAVGAEGSSSSNNNNGGLGDMGEVNLFGGCSNVDDPYHATRTTNLYNYHNSSHQLQPPPLSSGLQSSSCNNWLPPARSVCHGGAPPPFTIWNDT 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13539557 13544394 + Lsi11G009350.1 Lsi11g00935 674102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00935 672 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 314 - -
Lsi11g00935 672 SUPERFAMILY DNA-binding domain 378 439 IPR016177 GO:0003677
Lsi11g00935 672 SMART rav1_2 379 443 IPR001471 GO:0003700|GO:0006355
Lsi11g00935 672 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL1 344 670 - -
Lsi11g00935 672 ProSiteProfiles AP2/ERF domain profile. 379 437 IPR001471 GO:0003700|GO:0006355
Lsi11g00935 672 MobiDBLite consensus disorder prediction 174 197 - -
Lsi11g00935 672 Pfam AP2 domain 379 429 IPR001471 GO:0003700|GO:0006355
Lsi11g00935 672 CDD AP2 378 439 IPR001471 GO:0003700|GO:0006355
Lsi11g00935 672 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL1 50 314 - -
Lsi11g00935 672 MobiDBLite consensus disorder prediction 232 285 - -
Lsi11g00935 672 Gene3D AP2/ERF domain 379 439 IPR036955 GO:0003700|GO:0006355
Lsi11g00935 672 MobiDBLite consensus disorder prediction 211 300 - -
Lsi11g00935 672 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 344 670 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00616 Lsi-Chr7:6629649 Lsi11g00935 Lsi-Chr11:13539557 1.76E-47 dispersed
Lsi10g01048 Lsi-Chr10:14712752 Lsi11g00935 Lsi-Chr11:13539557 6.49E-78 dispersed
Lsi11g00935 Lsi-Chr11:13539557 Lsi02g02647 Lsi-Chr2:32891612 1.79E-39 dispersed
Lsi11g00935 Lsi-Chr11:13539557 Lsi01g00869 Lsi-Chr1:7000981 1.15E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26173 PF00847 AP2 4.90E-10 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00935 K09285 - csv:101219473 936.021