Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g00963 | ATGGGGTCCTGCTTGTCTTCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACCTCTCCGGCTAAGCATCATCGGAGCAAGAACAGTTCCAAGAGGAGATATGGTTCTAGAAATTCTTCCTTTGGGGATCTCTCACTCCATCGGATCCCCGGCAGGCTCTTCGCTAATGGCTTCACTGATGTGGCGTCTCTGTTCACGCAGCAGGGCAAGAAAGGGACCAATCAGGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACGGATGATGTTCATAGAGAGATCAGCCTTAATACAGGAAGTATGAACTCGGATGAAGCTACCTCCTTTTTATCTGCTGAAGAAGAGTCTAGGGCCTCCACTGATGTTGATGGAACAGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAACTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATTGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACACTCTTGTTGCCATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAGAGGTCGTGTCTTTGCTCTCCAAGACGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCCGGACTTGCCATGGCACGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCTGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTGCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTACTGCAGCTCGAACTCTGGTCGAAACTGCCATAAAAGCATGGAAACATAAATACCCAACTTCCAAAATTGATGACTGTGCAGTCGTTTGCCTCTTCCTTGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCAGAAGAGCAACAAAGTTTAACAGATCAAGTCAGCACTGCAGTCGAGAATGAAGATTTCTCTGGCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGAACCAGCAAGGAAATTTTGCAGGATGGAAGTGAAGAAGAAGATGAATCGAAGGAGGAAGAACATGCAGAAATGGGAATGGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAATACTTTGGTAACCCTGCCGAGATACGATCCTGGAAAAGAAGATAAGAAAGGGCGGAAGATAAGAAAAGTTATAAAAATTGAACTTGAGAGAGGTCGGCCCAGCCTTATTAGTTCGTCTGGGGAATTGTTGACACTCTCGTATGGGTAG | 1542 | 45.53 | MGSCLSSESRSPIPGSPTSPAKHHRSKNSSKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREISLNTGSMNSDEATSFLSAEEESRASTDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDTLVAIQLTVDLKPNLPAEAERIRKCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAIKAWKHKYPTSKIDDCAVVCLFLDSNSSNLSSASNTKPEEQQSLTDQVSTAVENEDFSGPNGLNRSGTVRTSKEILQDGSEEEDESKEEEHAEMGMEWSALEGVSRVNTLVTLPRYDPGKEDKKGRKIRKVIKIELERGRPSLISSSGELLTLSYG | 513 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 15029915 | 15033686 | + | Lsi11G009630.1 | Lsi11g00963 | 674130 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g00963 | 513 | MobiDBLite | consensus disorder prediction | 137 | 156 | - | - | |
| Lsi11g00963 | 513 | MobiDBLite | consensus disorder prediction | 137 | 166 | - | - | |
| Lsi11g00963 | 513 | ProSiteProfiles | PPM-type phosphatase domain profile. | 61 | 380 | IPR001932 | - | |
| Lsi11g00963 | 513 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Lsi11g00963 | 513 | PANTHER | PROTEIN PHOSPHATASE 2C 33-RELATED | 1 | 469 | - | - | |
| Lsi11g00963 | 513 | Gene3D | - | 59 | 382 | IPR036457 | - | |
| Lsi11g00963 | 513 | SMART | PP2C_4 | 52 | 378 | IPR001932 | - | |
| Lsi11g00963 | 513 | MobiDBLite | consensus disorder prediction | 386 | 450 | - | - | |
| Lsi11g00963 | 513 | SUPERFAMILY | PP2C-like | 61 | 381 | IPR036457 | - | |
| Lsi11g00963 | 513 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 469 | - | - | |
| Lsi11g00963 | 513 | MobiDBLite | consensus disorder prediction | 386 | 431 | - | - | |
| Lsi11g00963 | 513 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Lsi11g00963 | 513 | Pfam | Protein phosphatase 2C | 175 | 359 | IPR001932 | - | |
| Lsi11g00963 | 513 | CDD | PP2Cc | 61 | 380 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01588 | Lsi-Chr1:14071924 | Lsi11g00963 | Lsi-Chr11:15029915 | 8.93E-117 | dispersed | |
| Lsi04g01437 | Lsi-Chr4:22091024 | Lsi11g00963 | Lsi-Chr11:15029915 | 3.81E-91 | dispersed | |
| Lsi06g00069 | Lsi-Chr6:607397 | Lsi11g00963 | Lsi-Chr11:15029915 | 3.39E-98 | dispersed | |
| Lsi06g00689 | Lsi-Chr6:10884609 | Lsi11g00963 | Lsi-Chr11:15029915 | 0 | dispersed | |
| Lsi07g01391 | Lsi-Chr7:20240767 | Lsi11g00963 | Lsi-Chr11:15029915 | 4.07E-160 | dispersed | |
| Lsi08g00355 | Lsi-Chr8:9742854 | Lsi11g00963 | Lsi-Chr11:15029915 | 1.18E-170 | dispersed | |
| Lsi09g01457 | Lsi-Chr9:22554869 | Lsi11g00963 | Lsi-Chr11:15029915 | 2.52E-76 | dispersed | |
| Lsi11g00609 | Lsi-Chr11:6480557 | Lsi11g00963 | Lsi-Chr11:15029915 | 1.17E-117 | dispersed | |
| Lsi11g00963 | Lsi-Chr11:15029915 | Lsi11g01535 | Lsi-Chr11:23687834 | 3.63E-147 | dispersed | |
| Lsi11g00963 | Lsi-Chr11:15029915 | Lsi10g00876 | Lsi-Chr10:12985503 | 1.69E-150 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g00963 | - | - | csv:101222150 | 885.56 |