Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00963 ATGGGGTCCTGCTTGTCTTCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACCTCTCCGGCTAAGCATCATCGGAGCAAGAACAGTTCCAAGAGGAGATATGGTTCTAGAAATTCTTCCTTTGGGGATCTCTCACTCCATCGGATCCCCGGCAGGCTCTTCGCTAATGGCTTCACTGATGTGGCGTCTCTGTTCACGCAGCAGGGCAAGAAAGGGACCAATCAGGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACGGATGATGTTCATAGAGAGATCAGCCTTAATACAGGAAGTATGAACTCGGATGAAGCTACCTCCTTTTTATCTGCTGAAGAAGAGTCTAGGGCCTCCACTGATGTTGATGGAACAGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAACTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATTGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACACTCTTGTTGCCATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAGAGGTCGTGTCTTTGCTCTCCAAGACGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCCGGACTTGCCATGGCACGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCTGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTGCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTACTGCAGCTCGAACTCTGGTCGAAACTGCCATAAAAGCATGGAAACATAAATACCCAACTTCCAAAATTGATGACTGTGCAGTCGTTTGCCTCTTCCTTGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCAGAAGAGCAACAAAGTTTAACAGATCAAGTCAGCACTGCAGTCGAGAATGAAGATTTCTCTGGCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGAACCAGCAAGGAAATTTTGCAGGATGGAAGTGAAGAAGAAGATGAATCGAAGGAGGAAGAACATGCAGAAATGGGAATGGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAATACTTTGGTAACCCTGCCGAGATACGATCCTGGAAAAGAAGATAAGAAAGGGCGGAAGATAAGAAAAGTTATAAAAATTGAACTTGAGAGAGGTCGGCCCAGCCTTATTAGTTCGTCTGGGGAATTGTTGACACTCTCGTATGGGTAG 1542 45.53 MGSCLSSESRSPIPGSPTSPAKHHRSKNSSKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREISLNTGSMNSDEATSFLSAEEESRASTDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDTLVAIQLTVDLKPNLPAEAERIRKCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAIKAWKHKYPTSKIDDCAVVCLFLDSNSSNLSSASNTKPEEQQSLTDQVSTAVENEDFSGPNGLNRSGTVRTSKEILQDGSEEEDESKEEEHAEMGMEWSALEGVSRVNTLVTLPRYDPGKEDKKGRKIRKVIKIELERGRPSLISSSGELLTLSYG 513
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 15029915 15033686 + Lsi11G009630.1 Lsi11g00963 674130
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00963 513 MobiDBLite consensus disorder prediction 137 156 - -
Lsi11g00963 513 MobiDBLite consensus disorder prediction 137 166 - -
Lsi11g00963 513 ProSiteProfiles PPM-type phosphatase domain profile. 61 380 IPR001932 -
Lsi11g00963 513 MobiDBLite consensus disorder prediction 1 16 - -
Lsi11g00963 513 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 469 - -
Lsi11g00963 513 Gene3D - 59 382 IPR036457 -
Lsi11g00963 513 SMART PP2C_4 52 378 IPR001932 -
Lsi11g00963 513 MobiDBLite consensus disorder prediction 386 450 - -
Lsi11g00963 513 SUPERFAMILY PP2C-like 61 381 IPR036457 -
Lsi11g00963 513 PANTHER ALPHABET, ISOFORM E-RELATED 1 469 - -
Lsi11g00963 513 MobiDBLite consensus disorder prediction 386 431 - -
Lsi11g00963 513 MobiDBLite consensus disorder prediction 1 39 - -
Lsi11g00963 513 Pfam Protein phosphatase 2C 175 359 IPR001932 -
Lsi11g00963 513 CDD PP2Cc 61 380 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01588 Lsi-Chr1:14071924 Lsi11g00963 Lsi-Chr11:15029915 8.93E-117 dispersed
Lsi04g01437 Lsi-Chr4:22091024 Lsi11g00963 Lsi-Chr11:15029915 3.81E-91 dispersed
Lsi06g00069 Lsi-Chr6:607397 Lsi11g00963 Lsi-Chr11:15029915 3.39E-98 dispersed
Lsi06g00689 Lsi-Chr6:10884609 Lsi11g00963 Lsi-Chr11:15029915 0 dispersed
Lsi07g01391 Lsi-Chr7:20240767 Lsi11g00963 Lsi-Chr11:15029915 4.07E-160 dispersed
Lsi08g00355 Lsi-Chr8:9742854 Lsi11g00963 Lsi-Chr11:15029915 1.18E-170 dispersed
Lsi09g01457 Lsi-Chr9:22554869 Lsi11g00963 Lsi-Chr11:15029915 2.52E-76 dispersed
Lsi11g00609 Lsi-Chr11:6480557 Lsi11g00963 Lsi-Chr11:15029915 1.17E-117 dispersed
Lsi11g00963 Lsi-Chr11:15029915 Lsi11g01535 Lsi-Chr11:23687834 3.63E-147 dispersed
Lsi11g00963 Lsi-Chr11:15029915 Lsi10g00876 Lsi-Chr10:12985503 1.69E-150 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00963 - - csv:101222150 885.56