Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00969 ATGGAGTTTCATTTCCTCTTTCTAATGCCATTTCTCTCACTCCTCTCTTCCGCCGCCGCCTGGATTAATGCTCACGCCACCTTCTACGGCGGCAGCGATGCTTCGGGGACAATGGGTGGAGCTTGTGGGTATGGGAATCTTTACAGTGAAGGGTACGGAACTAACACTGCAGCAGTTAGCACTGCCCTTTTCAACAATGGGTTGAGCTGTGGGTCTTGTTATGAAATCAAGTGTGTTAATGACCCAAAATGGTGCCTCCATGGCTCTATTTTGGTCACTGCAACCAATTTCTGTCCGCCTAACAATGCACTTCCTAATAACGCCGGCGGCTGGTGTAACCCTCCACTTCACCACTTTGACCTCTCCCAATCTGTCTTCCTCCACATTGCTCAATACCATGCCGGCATCGTCCCCGTCGCCTATCGGAGAGCTCCATGTAAGAGGAGGGGAGGAGTAAGGTTCACAATCAACGGCCATTCCTACTTCAACTTAGTACTAATAACCAACGTTGGGGGCGCCGGGGATGTTCATGCGGTGTTCGTGAAAGGATCAAGAACTGGTTGGCAATCAATGTCTAGAAACTGGGGACAGAACTGGCAAAGCCACAACTATTTGGATGGTCAACCTCTCTCCTTCAAGCTCACTACTAGCGACGGCCGTACCCTTATTTCCAACAATGTCGTTCCTGCCGGCTGGTCCTTTGGCCAGACCTTCACCGGCGCCCAATTCCGCTGA 735 51.16 MEFHFLFLMPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGTNTAAVSTALFNNGLSCGSCYEIKCVNDPKWCLHGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLHIAQYHAGIVPVAYRRAPCKRRGGVRFTINGHSYFNLVLITNVGGAGDVHAVFVKGSRTGWQSMSRNWGQNWQSHNYLDGQPLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGAQFR 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15332481 15336430 + Lsi11G009690.1 Lsi11g00969 674136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00969 244 SUPERFAMILY Barwin-like endoglucanases 11 169 IPR036908 -
Lsi11g00969 244 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Lsi11g00969 244 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Lsi11g00969 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Lsi11g00969 244 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Lsi11g00969 244 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576
Lsi11g00969 244 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lsi11g00969 244 PANTHER EXPANSIN-A15 6 243 IPR002963 GO:0009664
Lsi11g00969 244 Gene3D - 151 243 IPR036749 -
Lsi11g00969 244 Gene3D - 13 147 IPR036908 -
Lsi11g00969 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 151 IPR007112 -
Lsi11g00969 244 Pfam Lytic transglycolase 56 141 IPR009009 -
Lsi11g00969 244 SMART dpbb_1 56 141 IPR007112 -
Lsi11g00969 244 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Lsi11g00969 244 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Lsi11g00969 244 PRINTS Expansin signature 51 65 IPR002963 GO:0009664
Lsi11g00969 244 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Lsi11g00969 244 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Lsi11g00969 244 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Lsi11g00969 244 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Lsi11g00969 244 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Lsi11g00969 244 PRINTS Expansin signature 78 89 IPR002963 GO:0009664
Lsi11g00969 244 PANTHER EXPANSIN 6 243 - -
Lsi11g00969 244 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
Lsi11g00969 244 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Lsi11g00969 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00081 Lsi-Chr2:694390 Lsi11g00969 Lsi-Chr11:15332481 1.13E-69 dispersed
Lsi02g01475 Lsi-Chr2:20497709 Lsi11g00969 Lsi-Chr11:15332481 9.65E-132 dispersed
Lsi04g00889 Lsi-Chr4:8841940 Lsi11g00969 Lsi-Chr11:15332481 1.39E-118 dispersed
Lsi05g00714 Lsi-Chr5:9683404 Lsi11g00969 Lsi-Chr11:15332481 1.34E-83 dispersed
Lsi06g01458 Lsi-Chr6:25126453 Lsi11g00969 Lsi-Chr11:15332481 8.57E-136 dispersed
Lsi10g00889 Lsi-Chr10:13169875 Lsi11g00969 Lsi-Chr11:15332481 7.61E-37 dispersed
Lsi10g01386 Lsi-Chr10:17970338 Lsi11g00969 Lsi-Chr11:15332481 7.11E-122 dispersed
Lsi11g00969 Lsi-Chr11:15332481 Lsi04g00406 Lsi-Chr4:3973635 5.30E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00969 - - csv:101202833 457.988