Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00979 ATGGAGCATGGAGGTGTTGTGTCGAAGGGCATGGTATCAGACCCTTCAAGTTCGTACAAAAAAATCATAATAGTCGCAGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCATTGCTGACACCTTACGTACAACAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGCGGGCCATTATCAGGGCTTATTGTGCAACCCACTGTTGGGTACTACAGCGATCGTTGCACCTCTAGATTTGGTCGTCGTCGACCATTCATTGTTGCTGGGGCTTGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGTCATGCAGCGGGAGATCAACTTAGCAAACGCACAAAACCAAGGGCTGTGGCCATATTTGTGGTTGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCATCTAACAACCACAAGAAGATGAGAATGGCCAATGGATTTTTCTCCTTCTTCATGGGGGTAGGGAATGTCTTGGGGTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCTTTCACAATAACAAAAGCATGTGATACTTACTGCGCCAACCTCAAAACATGCTTCTTGATTGACATTGTGTTCCTGCTCATCATTACCGCCTTCGCCGTGTTGTCAGTGAGCGAGAAGCCATTTGAGCGCTCGGAAATTGACGAAGAAGCAACACCCTTTTTTGGGAAGTTGTTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATTTTGTTGCTCGTAACAGCCTTGAACTGGATTGGTTGGTTCCCATTTATAATGTACGACACTGACTGGATGGGTTTAGAAGTGTATGGAGGAAAGCCAAATGGGACTCCAGAACAAGTCAAGTTCTATGACCTCGGTGTTCGTGCTGGGGCCCTTGGGTTGATGGTAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGGGATTGAGCCAGTGAGCCGTATTCTAGGAGGCCTCAGGTGGTGGTGGGGAATTGTCAACATTATATTCACCATTTGCATGGGATCCACTGTCGTTGTTACAAAGGTTGCTAAGCATTGGAGATCCATTAACGGTTTGCTCCCTCCTCCTACGAACGTCAAAGCTGGAGCCTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCCCTTGCATCCATCTTTTCTTCAGAATCTGAAGCGGGTCAAGGCCTCTCTTTAGGAATTCTCAACCTTTTTATTGTCATCCCACAATTTTTTGTATCTGCAGTTAGTGGGCCGTTAGATGCAGCTTTCGGAGGTGGAAACTTACCTGCATTCGTATTGGGTGGAGTTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTTGTCCTCCCTGATCCACCACCTCAATCTGATGTCTCCATAATAATGGGCGCAGGCCATTGA 1488 46.71 MEHGGVVSKGMVSDPSSSYKKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGACFVAAAVFLIGFAADIGHAAGDQLSKRTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSSNNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLIITAFAVLSVSEKPFERSEIDEEATPFFGKLFGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRAGALGLMVNSFVLGFSALGIEPVSRILGGLRWWWGIVNIIFTICMGSTVVVTKVAKHWRSINGLLPPPTNVKAGAFSIFAVLGIPLSVTFSVPFALASIFSSESEAGQGLSLGILNLFIVIPQFFVSAVSGPLDAAFGGGNLPAFVLGGVASFASAMCAMFVLPDPPPQSDVSIIMGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16015035 16016769 - Lsi11G009790.1 Lsi11g00979 674146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00979 495 Gene3D MFS general substrate transporter like domains 16 484 IPR036259 -
Lsi11g00979 495 Pfam MFS/sugar transport protein 28 279 - -
Lsi11g00979 495 CDD MFS_SLC45_SUC 31 476 - -
Lsi11g00979 495 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Lsi11g00979 495 TIGRFAM GPH_sucrose: sucrose/H+ symporter 18 482 IPR005989 GO:0005887|GO:0008515|GO:0015770
Lsi11g00979 495 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 18 488 - -
Lsi11g00979 495 PANTHER SUGAR TRANSPORTER 18 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00979 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 901.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00979 Lsi-Chr11:16015035 Lsi11g00980 Lsi-Chr11:16048908 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00979 . 14 484 Sucrose Transporter Gene Family AT1G22710 63.4 8.3e-177 617.1
Lsi11g00980 . 14 484 Sucrose Transporter Gene Family AT1G22710 63.0 2.4e-176 615.5
Lsi08g01052 . 32 495 Sucrose Transporter Gene Family AT1G22710 51.1 6.4e-137 484.6
Lsi11g00980 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.0 7.0e-173 604.0
Lsi11g00979 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.2 2.7e-172 602.1
Lsi08g01052 . 25 495 Sucrose Transporter Gene Family AT2G14670 50.6 9.2e-133 470.7
Lsi11g00980 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 8.8e-146 513.8
Lsi11g00979 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-144 510.0
Lsi02g01764 . 152 638 Sucrose Transporter Gene Family AT2G02860 64.9 2.1e-179 625.5
Lsi11g00980 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.7 6.5e-163 570.9
Lsi11g00979 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.7 2.5e-162 568.9
Lsi11g00980 . 17 479 Sucrose Transporter Gene Family AT5G43610 61.9 1.5e-170 596.3
Lsi11g00979 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.2 5.5e-170 594.3
Lsi08g01052 . 18 503 Sucrose Transporter Gene Family AT1G09960 69.3 1.3e-201 699.5
Lsi11g00979 . 8 489 Sucrose Transporter Gene Family AT1G09960 52.2 2.1e-135 479.6
Lsi11g00980 . 8 489 Sucrose Transporter Gene Family AT1G09960 52.7 1.0e-134 477.2
Lsi11g00979 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.5 7.5e-170 594.0
Lsi11g00980 . 14 495 Sucrose Transporter Gene Family AT1G71880 59.9 1.3e-169 593.2
Lsi08g01052 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 4.8e-132 468.4
Lsi11g00980 . 17 484 Sucrose Transporter Gene Family AT1G71890 59.8 8.6e-166 580.5
Lsi11g00979 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 1.9e-165 579.3
Lsi11g00979 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.5 7.5e-170 594.0
Lsi11g00980 . 14 495 Sucrose Transporter Gene Family AT1G71880 59.9 1.3e-169 593.2
Lsi08g01052 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 4.8e-132 468.4
Lsi11g00979 . 14 484 Sucrose Transporter Gene Family AT1G22710 63.4 8.3e-177 617.1
Lsi11g00980 . 14 484 Sucrose Transporter Gene Family AT1G22710 63.0 2.4e-176 615.5
Lsi08g01052 . 32 495 Sucrose Transporter Gene Family AT1G22710 51.1 6.4e-137 484.6
Lsi02g01764 . 152 638 Sucrose Transporter Gene Family AT2G02860 64.9 2.1e-179 625.5
Lsi08g01052 . 18 503 Sucrose Transporter Gene Family AT1G09960 69.3 1.3e-201 699.5
Lsi11g00979 . 8 489 Sucrose Transporter Gene Family AT1G09960 52.2 2.1e-135 479.6
Lsi11g00980 . 8 489 Sucrose Transporter Gene Family AT1G09960 52.7 1.0e-134 477.2
Lsi11g00980 . 17 484 Sucrose Transporter Gene Family AT1G71890 59.8 8.6e-166 580.5
Lsi11g00979 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 1.9e-165 579.3
Lsi11g00980 . 17 479 Sucrose Transporter Gene Family AT5G43610 61.9 1.5e-170 596.3
Lsi11g00979 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.2 5.5e-170 594.3
Lsi11g00980 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 8.8e-146 513.8
Lsi11g00979 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-144 510.0
Lsi11g00980 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.0 7.0e-173 604.0
Lsi11g00979 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.2 2.7e-172 602.1
Lsi08g01052 . 25 495 Sucrose Transporter Gene Family AT2G14670 50.6 9.2e-133 470.7
Lsi11g00980 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.7 6.5e-163 570.9
Lsi11g00979 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.7 2.5e-162 568.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g00979 Lsi_Chr11 FPKM 6.704806 4.63803 47.972748 47.978432 15.069292 17.790905 15.398705 10.539648 9.222077 8.410588