Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00979 ATGGAGCATGGAGGTGTTGTGTCGAAGGGCATGGTATCAGACCCTTCAAGTTCGTACAAAAAAATCATAATAGTCGCAGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCATTGCTGACACCTTACGTACAACAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGCGGGCCATTATCAGGGCTTATTGTGCAACCCACTGTTGGGTACTACAGCGATCGTTGCACCTCTAGATTTGGTCGTCGTCGACCATTCATTGTTGCTGGGGCTTGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGTCATGCAGCGGGAGATCAACTTAGCAAACGCACAAAACCAAGGGCTGTGGCCATATTTGTGGTTGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCATCTAACAACCACAAGAAGATGAGAATGGCCAATGGATTTTTCTCCTTCTTCATGGGGGTAGGGAATGTCTTGGGGTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCTTTCACAATAACAAAAGCATGTGATACTTACTGCGCCAACCTCAAAACATGCTTCTTGATTGACATTGTGTTCCTGCTCATCATTACCGCCTTCGCCGTGTTGTCAGTGAGCGAGAAGCCATTTGAGCGCTCGGAAATTGACGAAGAAGCAACACCCTTTTTTGGGAAGTTGTTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATTTTGTTGCTCGTAACAGCCTTGAACTGGATTGGTTGGTTCCCATTTATAATGTACGACACTGACTGGATGGGTTTAGAAGTGTATGGAGGAAAGCCAAATGGGACTCCAGAACAAGTCAAGTTCTATGACCTCGGTGTTCGTGCTGGGGCCCTTGGGTTGATGGTAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGGGATTGAGCCAGTGAGCCGTATTCTAGGAGGCCTCAGGTGGTGGTGGGGAATTGTCAACATTATATTCACCATTTGCATGGGATCCACTGTCGTTGTTACAAAGGTTGCTAAGCATTGGAGATCCATTAACGGTTTGCTCCCTCCTCCTACGAACGTCAAAGCTGGAGCCTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCCCTTGCATCCATCTTTTCTTCAGAATCTGAAGCGGGTCAAGGCCTCTCTTTAGGAATTCTCAACCTTTTTATTGTCATCCCACAATTTTTTGTATCTGCAGTTAGTGGGCCGTTAGATGCAGCTTTCGGAGGTGGAAACTTACCTGCATTCGTATTGGGTGGAGTTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTTGTCCTCCCTGATCCACCACCTCAATCTGATGTCTCCATAATAATGGGCGCAGGCCATTGA 1488 46.71 MEHGGVVSKGMVSDPSSSYKKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGACFVAAAVFLIGFAADIGHAAGDQLSKRTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSSNNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLIITAFAVLSVSEKPFERSEIDEEATPFFGKLFGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRAGALGLMVNSFVLGFSALGIEPVSRILGGLRWWWGIVNIIFTICMGSTVVVTKVAKHWRSINGLLPPPTNVKAGAFSIFAVLGIPLSVTFSVPFALASIFSSESEAGQGLSLGILNLFIVIPQFFVSAVSGPLDAAFGGGNLPAFVLGGVASFASAMCAMFVLPDPPPQSDVSIIMGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16015035 16016769 - Lsi11G009790.1 Lsi11g00979 674146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00979 495 Gene3D MFS general substrate transporter like domains 16 484 IPR036259 -
Lsi11g00979 495 Pfam MFS/sugar transport protein 28 279 - -
Lsi11g00979 495 CDD MFS_SLC45_SUC 31 476 - -
Lsi11g00979 495 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Lsi11g00979 495 TIGRFAM GPH_sucrose: sucrose/H+ symporter 18 482 IPR005989 GO:0005887|GO:0008515|GO:0015770
Lsi11g00979 495 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 18 488 - -
Lsi11g00979 495 PANTHER SUGAR TRANSPORTER 18 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00979 Lsi-Chr11:16015035 Lsi11g00980 Lsi-Chr11:16048908 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00979 K15378 - csv:116401998 901.353