Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00980 ATGGAGCATGGAGGTGTTGTATCGAAGGGCATGGTATCAGACCCTTCAAGTCCGTACAAAAAAATCATAATAGTCGCAGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCATTGCTGACACCTTATGTACAACAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGCGGGCCATTATCAGGGCTTATTGTGCAACCCACTGCTGGGTACTACAGCGATCGTTGCACCTCTAGATTTGGTCGTCGTCGACCATTCATTGTTGCTGGGGCTTGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGTCATGCAGCAGGAGATCAACTTAGCAAACGCACAAAACCAAGGGCTGTGGCCATATTTGTGGTTGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCATGTAACAACCACAAGAAGATGAGAATGGCCAATGGATTTTTCTCCTTCTTCATGGGGGTAGGGAATGTCTTGGGGTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCTTTCACAATAACAAAAGCATGTGACACTTACTGCGCCAACCTCAAAACATGCTTCTTGATCGATATTGTGTTCCTACTCATCATTACCACCTTCGCGGTGTTGTCGGTGAGCGAGAAGCCATTTGAGAGCTCGGAAATTGACGAAGAAGCAACACCCTTTTTTGGGCAGTTGTTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATTTTGTTGCTCGTAACAGCCTTGAACTGGATTGGTTGGTTCCCATTTATAATGTACGACACTGACTGGATGGGTTTAGAAGTGTACGGAGGAAAGCCAAATGGGACTCCAGAACAAGTCAAGTTCTATGACCTCGGTGTTCGTGCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGGGATTGAGCCAGTGAGCCGTATTCTAGGAGGCCTCAGGTGGTGGTGGGGAATTGTCAACATTATATTCACCATTTGTATGGGGTCCACTGTCGTTGTTACAAAGGTTGCTGAGCGTTGGAGGTCCATTAATGGTTTGCTCCTTCCTCCCACGAACGTTAAGGCTGGAGCCTTTTCTATCTTTGCAATCTTAGGTATTCCATTGTCGGTTACTTATAGCGTTCCCTTTGCCCTTGCATCCATCTTTTCTTCAGAATCTGAAGCGGGTCAAGGCCTTTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTTTTTGTATCTGCAGTTAGTGGGCCCCTAGATGGAGCTTTTGGAGGTGGAAACTTACCCGCATTCGTATTGGGTGGAGTTGCTTCTTTTGCAAGCGCAATCTGTGCTATGTTTGTCCTCCCCGATCCACCACCTCAATCTGATGTCTCCATGATAATGGGCGCTGACCATTGA 1488 46.77 MEHGGVVSKGMVSDPSSPYKKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTAGYYSDRCTSRFGRRRPFIVAGACFVAAAVFLIGFAADIGHAAGDQLSKRTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCNNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLIITTFAVLSVSEKPFESSEIDEEATPFFGQLFGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRAGALGLMINSFVLGFSALGIEPVSRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSINGLLLPPTNVKAGAFSIFAILGIPLSVTYSVPFALASIFSSESEAGQGLSLGILNLFIVIPQFFVSAVSGPLDGAFGGGNLPAFVLGGVASFASAICAMFVLPDPPPQSDVSMIMGADH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16048908 16050681 - Lsi11G009800.1 Lsi11g00980 674147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00980 495 Pfam MFS/sugar transport protein 28 279 - -
Lsi11g00980 495 CDD MFS_SLC45_SUC 31 476 - -
Lsi11g00980 495 Gene3D MFS general substrate transporter like domains 17 478 IPR036259 -
Lsi11g00980 495 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 14 488 - -
Lsi11g00980 495 PANTHER SUGAR TRANSPORTER 14 488 - -
Lsi11g00980 495 SUPERFAMILY MFS general substrate transporter 20 484 IPR036259 -
Lsi11g00980 495 TIGRFAM GPH_sucrose: sucrose/H+ symporter 18 482 IPR005989 GO:0005887|GO:0008515|GO:0015770
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01052 Lsi-Chr8:19137124 Lsi11g00980 Lsi-Chr11:16048908 4.96E-159 dispersed
Lsi11g00979 Lsi-Chr11:16015035 Lsi11g00980 Lsi-Chr11:16048908 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00980 K15378 - csv:116401998 902.894