Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00985 ATGATGAGTTTAAGAAGTGGAGTAATGTTGGGAATGATAACATGGTTGGTTTGGACATGGATGATTGTTGTTCATAGATGGAATCAAAGGAAGAAGACGACAGGTCCCAAAACATGGCCACTCGTAGGAGCAGCAATCGAACAGTTTTTAAATTACCACAGAATGCATGATTGGCTTCTTGGTTACCTTAATCTCTCCAAAACTGTTGTCGTTCCTATGCCTTTCACTACTTATACTTACATTGCTGACCCTGCCAATGTTCAGCATGTTCTCAAGACCAACTTTGCTAATTATCCAAAGTCTGGTGATAATTATTTATTGAAGGGTGATGTGTATCATTCATACATGGAAGTGCTTCTTGGAGATGGGATCTTCAACGTAGATGGAGAGCTGTGGAGGAAACAAAGGAAAACTGCGAGCTTCGAATTTGCATCGAAGAATTTGAGGGATTTCAGTACTTTAGTTTTCAGAGAGTACAGTCTCAAGCTATCAAATATTTTAACACAAGCCTATACTCATGAATTGTTGATGAGAATGACATTAGACTCGATATGCAAGGTGGGATTTGGAGTTGAAATTGGATCGTTGGCTCCAAATTTGCCAGAAAATGGTTTTGCCAAGGCCTTTGATACAGCCAACATGATCGTCACCCTTCGCTTCATCGATCCTTTATGGAAAATTAAAAGATTTTTGAATTTGGGATCTGAAGCTCTTCTTGACAAGTCCATCAAAACCATCGATGGTTTCACCTACTCTGTCATTGCCACAAGGAAAGAAGAGATCCTACAAGCTAAAACCACACGCAAAGATGCCAATAAGATAAAGCATGACATATTGTCAAGATTTATTGAGTTAGGGGAAGACCCAATCAACAATTTCACAAACAAAAGTTTAAGAGATATTGTTCTAAACTTCGTGATTGCTGGACGTGACACAACAGCTGCAACTCTTTCATGGGCTATTTATATGGTAATGACTCATTCTCATGTAGCCGAAAAACTTTATTCAGAGCTCAAGAGTTTTGAAGAAGAAAGAGCCAAAGAAGACAACATTTCATTGCTTCAATATCAACCAACTGATGTTCAATCCTTTGAGAGAAGAGACCCAAAGGGAATTTTGGAGGATGATGTATTGCCAGATGGGACAAAGGTAAGAGCAGGAGGAATGGTGACATATGTTCCTTACTCAATGGGAAGAATGGAATACAATTGGGGTTCTGATGCAACTTCTTTTAACCCTGAAAGATGGCTCAAACAAGGCATTTTCCACAATGAATCTCCATTTAAGTTCACAGCTTTTCAGGCTGGACCAAGGATTTGCATGGGGAAAGACTCGGCATATCTACAGATGAAAATGGCTCTTGCCATTTTGTGCAGATTCTACAAATTTAGTTTGGTGAGTGGGCATCGAGTCAACTACAGAATGATGACTATTCTCTCCATGGCTAATGGCTTGAAAGTTACCGTCGCTCTACGCTCT 1479 39.69 MMSLRSGVMLGMITWLVWTWMIVVHRWNQRKKTTGPKTWPLVGAAIEQFLNYHRMHDWLLGYLNLSKTVVVPMPFTTYTYIADPANVQHVLKTNFANYPKSGDNYLLKGDVYHSYMEVLLGDGIFNVDGELWRKQRKTASFEFASKNLRDFSTLVFREYSLKLSNILTQAYTHELLMRMTLDSICKVGFGVEIGSLAPNLPENGFAKAFDTANMIVTLRFIDPLWKIKRFLNLGSEALLDKSIKTIDGFTYSVIATRKEEILQAKTTRKDANKIKHDILSRFIELGEDPINNFTNKSLRDIVLNFVIAGRDTTAATLSWAIYMVMTHSHVAEKLYSELKSFEEERAKEDNISLLQYQPTDVQSFERRDPKGILEDDVLPDGTKVRAGGMVTYVPYSMGRMEYNWGSDATSFNPERWLKQGIFHNESPFKFTAFQAGPRICMGKDSAYLQMKMALAILCRFYKFSLVSGHRVNYRMMTILSMANGLKVTVALRS 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16390830 16396744 - Lsi11G009850.1 Lsi11g00985 674152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00985 493 Gene3D Cytochrome P450 16 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 SUPERFAMILY Cytochrome P450 34 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 Coils Coil 331 351 - -
Lsi11g00985 493 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 PRINTS E-class P450 group I signature 392 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 Pfam Cytochrome P450 35 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g00985 493 PANTHER CYTOCHROME P450 704B1 11 490 - -
Lsi11g00985 493 PANTHER CYTOCHROME P450 11 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01978 Lsi-Chr5:26884548 Lsi11g00985 Lsi-Chr11:16390830 1.13E-86 dispersed
Lsi05g01984 Lsi-Chr5:26947579 Lsi11g00985 Lsi-Chr11:16390830 1.08E-105 dispersed
Lsi11g00985 Lsi-Chr11:16390830 Lsi02g02534 Lsi-Chr2:31830474 2.66E-103 dispersed
Lsi11g00985 Lsi-Chr11:16390830 Lsi09g00245 Lsi-Chr9:2581643 3.28E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00985 K20495 - csv:101222076 823.542