Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g00994 ATGCTACTTATAAGTTGCTCTTGGTTCTACATCGGGTTCAAGAGATGGAAGCTCATAAAACTGAAAGCAAATTTCTTCCAAAGAAATGGAGGATTAATGTTAGAGCAACAGCTTTCCATCCGAGATGAAGCCGCACAAACCGCTAAAATTTTCACAGCAGAGGAATTACAGAAAGCCACTAACAACTACTCCGACGACCGAATCGTCGGCAAAGGCGGCTTCGGAACAGTCTACAAAGGCATCCTCCCTACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGATCGTCGATAAAACTCAGAACAAACAGTTCATCAACGAAGTCATTGTCCTCTCCCAGATCAATCACCGAAACACAGTCAAACTCTTAGGCTGTTGCTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAATTCGTCTCCAACGGTACGCTTTTCGATCACATTCACAAGAGAAAATCGCAGCGTTCCATTCCTTGGAAGATCCGCCTCAAAATCGCATCCGAAACGGCCGGAGTCCTCTCCTATCTTCACTCCTCCGCCACGATTCCGATCATTCACAGAGATGTTAAGTCCACAAACATTCTCCTCGACGAAAACTTCACAGCGAAGGTGTCCGATTTCGGTGCTTCGAAACTAGTTCCCTTAGATCAGGCCGACTTGAACACGATCGTGCAAGGAACTCTAGGATACCTAGATCCAGAGTATTTGCAAACCAGTCAATTGACGGAGAAGAGCGATGTGTACAGTTTCGGCGTGGTTCTCGTGGAATTGATGACCGGAAAAGCTCCTCTATCCTTCAGCCGATCGGAGGAAGAAAGGAATTTATCAATGCACTTTCTAATCGCTCTGAAACAGAATCGGCTTGGAGAAATTCTGGATAGAAGTTTAGGCGGCGATGTGGATGAGGAGCAAGTGAAGGAAGTTGCGAGCCTTGCGAAGAGGTGTTTGAGAGTGAAGGGAGAAGAAAGACCGACGATGAAGGAGGTTGGTGCAGAGCTTGAAGGACTGTGTCAAATGGCGTTCGGTCATCCATGGAATGTTGATGATAAATCTTCGTCTGTTGAAGGAGCGGAGGTTTTGGTCTCAATCTTACTTTCACTTGCAACACTGAACAACAGCGCCATCATTGTTGTT 1134 46.65 MLLISCSWFYIGFKRWKLIKLKANFFQRNGGLMLEQQLSIRDEAAQTAKIFTAEELQKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKIVDKTQNKQFINEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHKRKSQRSIPWKIRLKIASETAGVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQADLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKAPLSFSRSEEERNLSMHFLIALKQNRLGEILDRSLGGDVDEEQVKEVASLAKRCLRVKGEERPTMKEVGAELEGLCQMAFGHPWNVDDKSSSVEGAEVLVSILLSLATLNNSAIIVV 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16665270 16672712 - Lsi11G009940.1 Lsi11g00994 674161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g00994 378 Gene3D Phosphorylase Kinase; domain 1 30 138 - -
Lsi11g00994 378 CDD STKc_IRAK 69 336 - -
Lsi11g00994 378 ProSiteProfiles Protein kinase domain profile. 63 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00994 378 Gene3D Transferase(Phosphotransferase) domain 1 139 340 - -
Lsi11g00994 378 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 357 IPR045274 GO:0007166
Lsi11g00994 378 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 2 357 - -
Lsi11g00994 378 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Lsi11g00994 378 SUPERFAMILY Protein kinase-like (PK-like) 48 331 IPR011009 -
Lsi11g00994 378 Pfam Protein kinase domain 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g00994 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Lsi11g00994 378 SMART serkin_6 63 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00745 Lsi-Chr6:13447858 Lsi11g00994 Lsi-Chr11:16665270 1.58E-124 dispersed
Lsi11g00994 Lsi-Chr11:16665270 Lsi08g00485 Lsi-Chr8:12691808 7.51E-161 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84038 PF00069 Pkinase 4.00E-52 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g00994 - - csv:101206607 667.922