Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01024 ATGGGCCCACCCAAAACCCTCCGCACGATCTCACAAGAAGCCTTCGACGAGGTGGTAAGAGAGAATGTGGAGGACCTGGGGATGGATCCGACTGAAGCTCTCCAGGATGCAATTGAAACCTTAACTCTCCAAGGCGTTGATCTCTCAGGCATTGTGAGATGTATTCCTGGAGAGGGTAGCGCGAGAGATAACCCTTTGGTACAGAGCTTGGAGAGGCTGAAACAATTGGACGGTGATTCGAAGGATAGAATCAGTGATGAGTGTGTTGAGGAGACGGTGGTTTTATTTGATAGAATTTCGGAGCTATGTGGATCCAAAGAAGAGTCCGGAAATGCGTCGATTGCATTAAGAAATGGGGGATTAGAATTGCTTTGTTCTATTTGTTATAAGATTCCAAGTGATTGCGAGCGTGCTGTTGCTTCCGCTTTGAGGACGATGGTGTTATTGCTTCAAGATTTACACAGCACGGAAATATTTCGTAACAGCAATGGACCCAAAATTGTAATGGATATTCTAAATAATGGCAAGCAAAATGTAGACATCTTACATGGTGGCTTTGCTGTCGTTGCTGCGGCTGCGACTGCTAATGAGGTTCTTAAAGAAGTATTCATGGAGATGAATATTGATGAACTTATTTTGCAGACTCTGAGTACTTACAGAGGTGACTGTATTAGTAGCTTATATGATGCTATTCGGATTCTGCTAACACCTGATGACCATCGTGTTTATGGTTATGCCCGAAGATTTGCAAAAATTGGAATTGCTAATGCTCTTGTTGACTCGCTACATGGAGGACTTAACTCAGCCGGTCTAGTTTCTGCGAGCATTGCTTTAAGGGCTGTTGCTGTTAATGATGAAATTTGTAAATCCATAGCTGAAAATGGTGGTATTGATGCAGTTCTGAGATGCATTGACGACAGTGGTGATCAAGGCAATAAAATGGTAGCTAAAGTTTGCTGTTCTTTGTTATCAAAGTTGGCAGGAAGTGACGTTAACAAGAGCGCTATTATTGAAAAGAAAGGATTGGATAAACTAATAAGGCTTTCATCCAGATTTAGTGATGATCCATCTGTTCTGCAGGAGGTAATGTCGATTATATCAGTGCTTACATTGAGATCTCCAGAAAATGCAACACACGCAATTGAAGCTGGGGCTGGAGATCTTGCCATTCAAGCTATGCAGAAGTTCCCTTCAGCTCAACAAATGCAAAGGAACTCCTGTAACATGATACGAAATCTTGTAGTCAGGAACCCAGAAAACAGAGCTCTTTTGCTCAAAAGCGGAATTGAGAAATACATTCGAAAAGCGAAGCAAAACCATGAAAGCTGCAAAGATGCTGCAAGTGATGCCTTGAGAGACTTGGGGCTTGACAATTATCTGTAG 1383 42.44 MGPPKTLRTISQEAFDEVVRENVEDLGMDPTEALQDAIETLTLQGVDLSGIVRCIPGEGSARDNPLVQSLERLKQLDGDSKDRISDECVEETVVLFDRISELCGSKEESGNASIALRNGGLELLCSICYKIPSDCERAVASALRTMVLLLQDLHSTEIFRNSNGPKIVMDILNNGKQNVDILHGGFAVVAAAATANEVLKEVFMEMNIDELILQTLSTYRGDCISSLYDAIRILLTPDDHRVYGYARRFAKIGIANALVDSLHGGLNSAGLVSASIALRAVAVNDEICKSIAENGGIDAVLRCIDDSGDQGNKMVAKVCCSLLSKLAGSDVNKSAIIEKKGLDKLIRLSSRFSDDPSVLQEVMSIISVLTLRSPENATHAIEAGAGDLAIQAMQKFPSAQQMQRNSCNMIRNLVVRNPENRALLLKSGIEKYIRKAKQNHESCKDAASDALRDLGLDNYL 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17424517 17430518 + Lsi11G010240.1 Lsi11g01024 674191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01024 460 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 6 8 455 IPR040104 -
Lsi11g01024 460 SMART arm_5 417 456 IPR000225 GO:0005515
Lsi11g01024 460 SMART arm_5 284 328 IPR000225 GO:0005515
Lsi11g01024 460 SMART arm_5 329 371 IPR000225 GO:0005515
Lsi11g01024 460 SMART arm_5 373 415 IPR000225 GO:0005515
Lsi11g01024 460 Gene3D - 226 459 IPR011989 -
Lsi11g01024 460 SUPERFAMILY ARM repeat 106 452 IPR016024 -
Lsi11g01024 460 PANTHER UNCHARACTERIZED 8 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01024 K24166 ARMC6; armadillo repeat-containing protein 6 - csv:101208447 825.469
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g463 . . . . . . . . Cmo19g00638 . . . . . Sed10g2047 . Cpe15g00502 Bhi05g01139 Tan02g0886 Cmetu01g2178 . Hepe02g0570 . . Cla02g00582 Cam02g0615 Cec02g0614 Cco02g0630 Clacu02g0611 Cmu02g0608 Cre02g0939 Cone12ag1109 Cone8ag1150 . . . Csa07g00779 . Cme01g00032 Blo04g00492 . . Bda14g00522 Bpe15g00892 . Bma03g00523 . . . . . Cma19g00620 . Car19g00472 . . . . . . . . . . . . . . . . Lsi11g01024 . Chy01g00037 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009606 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01024 Lsi_Chr11 FPKM 10.303602 11.908326 180.978333 178.853104 27.076262 27.999674 23.624418 1.17072 0.363306 0.406298