Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01025 ATGGGGAGGATCCGTTGCTTCTTGGATATCAGTATTGGAGGTGATCTCGAGGGTAGAATTGTGGTGGAGCTTTACGACGATGTAGTGCCTAAAACAGCTGAGAATTTCAGGGCTCTTTGCACTGGCGAGAGGGGCATTGGTCCACATACTGGCGTTCCCCTTCATTTCAAGGGGTCATGTTTCCACCGTGTCATAAAAGGATTCATGGTACAAGGTGGAGATATTTCTGCTGGAGATGGTACTGGTGGAGAGTCTATATATGGCATGAAATTTGATGACGAAAATTTCGAGGTGAAACATGAAAGGAAAGGAATGTTGTCTATGGCTAATTCTGGTCCCAACACAAATGGTTCCCAATTTTTTATCACAACTACTCGCACTCCTCATTTAGATGGGAAACATGTAGTGTTTGGGAAGGTTCTGAAAGGAATGGGTGTTGTTCGTTCAATTGAGCATGTTACAACTGGTGACAATGCCCGCCCTACTGCTGATGTCATTATTGCGGATTGTGGAGAAATTCCTGAGGGAGCAGATGATGGAATTTCAAACTTTTTCAATGATGGGGATACTTTTCCTGATTGGCCAGCTGACCTAGAACAGAGCTCTGATGAACTTGAATGGTGGGTGAATGCAGTTGATTCTGTGAAGGTTTTTGGCAATGAGCATTACAAGAAGCAAGACTACAAGATGGCTCTCAGAAAGTACCGGAAGGCTTTACGCTACCTCGATATCTGCTGGGAAAAAGAAGGAATCGATGAAGGAAAGCCTAGTTCACAAAGGGGAGATGATTTGGCTTGTAAATTGAAGTTAGGGGATCTAAAAGGAGCATTGTTAGACACTGATTTTGCAATGCGTGATGGAGACAACAATGTTAAGGCTTTGTTTCGCCAAGGTCAGGCATACATGGCTCTTAATGACATTGATTCTGCTGTCGAAAGTTTCAAGAAGGCATCGGATTTGGAGCCAAATGATGCTGTCATAAAGAAAGAGCTTGCTGCCGCGAGGAAAAAGATTGCTGACAGACGTAATCAAGAAAGAAAGGCATATAGCAAGATGTTCCAGTAG 1065 43.57 MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGERGIGPHTGVPLHFKGSCFHRVIKGFMVQGGDISAGDGTGGESIYGMKFDDENFEVKHERKGMLSMANSGPNTNGSQFFITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGDNARPTADVIIADCGEIPEGADDGISNFFNDGDTFPDWPADLEQSSDELEWWVNAVDSVKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKPSSQRGDDLACKLKLGDLKGALLDTDFAMRDGDNNVKALFRQGQAYMALNDIDSAVESFKKASDLEPNDAVIKKELAAARKKIADRRNQERKAYSKMFQ 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17432350 17437941 - Lsi11G010250.1 Lsi11g01025 674192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01025 354 Pfam Tetratricopeptide repeat 292 324 IPR019734 GO:0005515
Lsi11g01025 354 SUPERFAMILY TPR-like 209 347 IPR011990 GO:0005515
Lsi11g01025 354 Gene3D - 2 179 IPR029000 -
Lsi11g01025 354 ProSiteProfiles TPR repeat profile. 291 324 IPR019734 GO:0005515
Lsi11g01025 354 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lsi11g01025 354 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Lsi11g01025 354 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Lsi11g01025 354 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Lsi11g01025 354 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Lsi11g01025 354 ProSiteProfiles TPR repeat region circular profile. 291 324 - -
Lsi11g01025 354 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 354 - -
Lsi11g01025 354 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Lsi11g01025 354 SUPERFAMILY Cyclophilin-like 5 175 IPR029000 -
Lsi11g01025 354 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Lsi11g01025 354 Gene3D Tetratricopeptide repeat domain 212 354 IPR011990 GO:0005515
Lsi11g01025 354 SMART tpr_5 291 324 IPR019734 GO:0005515
Lsi11g01025 354 SMART tpr_5 212 245 IPR019734 GO:0005515
Lsi11g01025 354 CDD cyclophilin_ABH_like 5 171 - -
Lsi11g01025 354 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 354 - -
Lsi11g01025 354 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01025 K05864 PPID, CYPD; peptidyl-prolyl isomerase D [EC:5.2.1.8] - csv:101208688 660.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00310 Lsi11g01025 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00896 Lsi-Chr1:7212493 Lsi11g01025 Lsi-Chr11:17432350 2.67E-31 transposed
Lsi02g02252 Lsi-Chr2:28986366 Lsi11g01025 Lsi-Chr11:17432350 3.45E-67 transposed
Lsi03g00105 Lsi-Chr3:1455304 Lsi11g01025 Lsi-Chr11:17432350 5.63E-38 transposed
Lsi03g01202 Lsi-Chr3:22487203 Lsi11g01025 Lsi-Chr11:17432350 4.60E-07 transposed
Lsi03g01872 Lsi-Chr3:30129789 Lsi11g01025 Lsi-Chr11:17432350 7.09E-38 transposed
Lsi04g00730 Lsi-Chr4:6731941 Lsi11g01025 Lsi-Chr11:17432350 8.47E-55 transposed
Lsi04g00977 Lsi-Chr4:10362660 Lsi11g01025 Lsi-Chr11:17432350 1.21E-58 transposed
Lsi04g01412 Lsi-Chr4:21886571 Lsi11g01025 Lsi-Chr11:17432350 1.82E-23 transposed
Lsi05g01974 Lsi-Chr5:26855016 Lsi11g01025 Lsi-Chr11:17432350 8.45E-08 transposed
Lsi06g00796 Lsi-Chr6:16625450 Lsi11g01025 Lsi-Chr11:17432350 1.18E-61 transposed
Lsi08g01176 Lsi-Chr8:20374694 Lsi11g01025 Lsi-Chr11:17432350 5.99E-50 transposed
Lsi09g01747 Lsi-Chr9:26124029 Lsi11g01025 Lsi-Chr11:17432350 4.89E-64 transposed
Lsi10g00483 Lsi-Chr10:6977132 Lsi11g01025 Lsi-Chr11:17432350 3.87E-62 transposed
Lsi10g00957 Lsi-Chr10:13937361 Lsi11g01025 Lsi-Chr11:17432350 9.48E-07 transposed
Lsi10g01435 Lsi-Chr10:18439411 Lsi11g01025 Lsi-Chr11:17432350 7.00E-69 transposed
Lsi11g00384 Lsi-Chr11:3977558 Lsi11g01025 Lsi-Chr11:17432350 4.31E-15 transposed
Lsi11g01182 Lsi-Chr11:20307474 Lsi11g01025 Lsi-Chr11:17432350 2.12E-72 transposed
Lsi11g01616 Lsi-Chr11:24488651 Lsi11g01025 Lsi-Chr11:17432350 1.78E-21 transposed
Lsi10g00310 Lsi-Chr10:4944910 Lsi11g01025 Lsi-Chr11:17432350 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002414 1 5 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 6 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01025 Lsi_Chr11 FPKM 13.554245 15.97885 0.0 0.0 0.949348 0.916767 0.411593 0.0 0.0 0.0