Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01029 ATGCCTTCTCTTCCTCCTTCCAACACCATCTCCGACTTTCTCCGCCAGATTTCCTTGCTCTCCAATCCCACAGACCGAGCCTCCAGACTCGATTCTTTTGTCTCCACCTTGGAGGATGAAAGGAAGAAGATCGATGCCTTCAAGCGGGAGCTTCCCTTATGTATGCTTCTATTGAACGATGCTATCCTTGCTTTGAAAGACTCTTCACTGCAATGTGCTTCTTCTTGTTCTTCGCCAAAGCCCAAGCCGGTTTTGGAGGAATTCATGTCGTTGAACAAAGATTCTTCTGATGAGAATGAGAAAGAACAGGATTGTAAAGATAAGAAGGAATGGATGAGCTCTGTTCAGCTTTGGAAGACTGATGAGTTTCAAAATACCCAAATCAAAACCAAGAGGAATGAGGGCTGGGGTTGTGTAGCTGCTGCAGAGGATCGGTTTCAGCTATGTCAAAAGAAGAATGAAGATAGATTATTTGTTGGGTTTAAGTCATCTTCTTCTGCTTTTCCAGCTATGGCTGCTGTGAAAAAGGAAGAGAAGATTGAATCTCCCATTTGTGCACTTTCTTTGGTCACTCCCAGCTTGAAGAATACTAGAGAAGAATTGGTTTCCTGTGTTTTGCGGTCGAGTGGCAACCGAGCAACTTCGACTTCTGCTGCCGATATTCAATCGAATCTACGGACAGTGTTGCCACCGCAGCAGCAGCAGCCCGCCCGGAAGCAGAGGAGGTGCTGGTCGCCAGAGTTGCATCGGCGGTTTGAGAATGCCTTGCAGCAACTTGGAGGTTCACAAGTCGCAACACCAAAGCAAATAAGAGAGTTGATGCAGGTAGATGGCTTGACAAATGATGAAGTAAAAAGTCATTTACAAAAATACCGTCTTCATACTCGGCGACTTCCATCGACTCCAGCTGCCCGAGCAGCAGACCAATCTCCTGTTGTTCTAGGAGATTTATGGATGTCCCAAGATGGGTGTGGTGAATCCTCAAAGGTGAGCAGCTCTCAGTCAGCATCACCGCAAGGTCCGCTCCAGTTCGCTGGAAACGGAGGGTATTCCACGACCGGAGGCGACAGCGTGGAGGATGACGAAGATACTAAATCTGAAAGCTATGACTATTGGAAATCTCAGACTCACACTGGCAAAAGATGTATATTTGAAGCATAA 1161 46.68 MPSLPPSNTISDFLRQISLLSNPTDRASRLDSFVSTLEDERKKIDAFKRELPLCMLLLNDAILALKDSSLQCASSCSSPKPKPVLEEFMSLNKDSSDENEKEQDCKDKKEWMSSVQLWKTDEFQNTQIKTKRNEGWGCVAAAEDRFQLCQKKNEDRLFVGFKSSSSAFPAMAAVKKEEKIESPICALSLVTPSLKNTREELVSCVLRSSGNRATSTSAADIQSNLRTVLPPQQQQPARKQRRCWSPELHRRFENALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPSTPAARAADQSPVVLGDLWMSQDGCGESSKVSSSQSASPQGPLQFAGNGGYSTTGGDSVEDDEDTKSESYDYWKSQTHTGKRCIFEA 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17644304 17646608 - Lsi11G010290.1 Lsi11g01029 674196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01029 386 MobiDBLite consensus disorder prediction 324 354 - -
Lsi11g01029 386 Pfam Myb-like DNA-binding domain 241 292 IPR001005 -
Lsi11g01029 386 PANTHER TRANSCRIPTION FACTOR HHO6 7 375 - -
Lsi11g01029 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 375 IPR044787 GO:0003700|GO:0006355
Lsi11g01029 386 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 239 294 IPR006447 GO:0003677
Lsi11g01029 386 SUPERFAMILY Homeodomain-like 237 297 IPR009057 -
Lsi11g01029 386 Gene3D - 238 296 - -
Lsi11g01029 386 Coils Coil 30 50 - -
Lsi11g01029 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 296 IPR017930 -
Lsi11g01029 386 MobiDBLite consensus disorder prediction 324 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01029 - - - csv:101221044 652.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00313 Lsi11g01029 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00912 Lsi-Chr6:18849156 Lsi11g01029 Lsi-Chr11:17644304 4.34E-31 dispersed
Lsi11g00287 Lsi-Chr11:2986019 Lsi11g01029 Lsi-Chr11:17644304 2.24E-51 dispersed
Lsi11g01029 Lsi-Chr11:17644304 Lsi07g01228 Lsi-Chr7:17950675 4.54E-14 dispersed
Lsi08g00393 Lsi-Chr8:10882331 Lsi11g01029 Lsi-Chr11:17644304 5.08E-47 transposed
Lsi01g00999 Lsi-Chr1:8248442 Lsi11g01029 Lsi-Chr11:17644304 2.47E-43 wgd
Lsi10g00313 Lsi-Chr10:5014715 Lsi11g01029 Lsi-Chr11:17644304 4.35E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g468 . Blo15g00726 Bda06g01033 Bda08g00828 Bpe07g00396 Bpe12g00065 . Bma12g00476 Cmo19g00641 Cmo11g01344 . Cma20g00887 . Car20g00764 Sed10g2052 Cpe04g00264 Cpe15g00505 Bhi05g01152 Tan02g0881 Cmetu01g1216 . Hepe02g0566 . . Cla02g00577 Cam02g0608 Cec02g0608 Cco02g0623 Clacu02g0604 Cmu02g0602 Cre02g0932 Cone12ag1112 Cone8ag1154 Cone3ag1117 Cone10ag1128 Lsi10g00313 Csa07g00784 Chy11g00433 Cme01g00026 . Blo13g00566 . Bda14g00523 . . Bma03g00524 . Sed01g0333 . Cmo20g00894 Cma11g01767 Cma19g00623 Car11g01081 Car19g00475 . . Bhi10g02074 Tan05g1390 Cmetu11g1909 . Hepe08g1062 . . Cla09g01716 Cam09g1810 Cec09g1872 Cco09g1965 . . Cre01g0695 Lsi11g01029 Csa02g01203 Chy01g00032 Cme11g00507
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001343 4 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26178 PF00249 Myb_DNA-binding 1.00E-06 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01029 Lsi_Chr11 FPKM 0.234968 0.178091 1.559322 1.951397 0.836407 0.842436 0.976898 1.899113 1.509237 2.268727