Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01030 ATGGATCGGTCGGCACTCACTGTTGGACCGGGAATGGACATTCCGATCATGCACGATAGCGATCGTTATGAGCTTGTGCGAGACATTGGCTCTGGAAACTTCGGAATTGCCAGATTGATGAGGGATAAGCAAACCGGGGAGCTCGTTGCCGTCAAGTACATCGAGAGAGGTGAGAAGGTTAGTCAGCTGGTGATCTTGACCCCAACTCATCTTGCAATTGTGATGGAATACGCATCTGGAGGAGAGCTCTTTGAACGGATCTGCAATGCCGGACGGTTCAGCGAGGATGAGGCACGTTTCTTCTTCCAGCAACTTATATCTGGTGTCAGCTATTGTCATGCAATGCAAGTATGTCATCGTGATTTGAAATTGGAGAATACATTGCTGGATGGAAGTCCTGCTCCTCGTTTGAAGATTTGTGATTTTGGATACTCAAAGTCTTCTGTGCTGCATTCACAGCCAAAATCAACAGTTGGCACTCCTGCATATATTGCCCCCGAGGTGTTACTTAAGAAAGAGTATGATGGCAAGATTGCAGACGTGTGGTCATGTGGGGTGACCTTATATGTCATGTTGGTTGGTGCATATCCCTTTGAGGACCCCGAGGACCCAAAAAACTTCCGCAAAACAATTCAGCGAATCCTGAATGTACAGTACTCAATTCCTGATTACGTTCTTATCTCTCCCGAGTGTCGTCATCTGATCTCTAGGATTTTTGTTGCCGACCCAACTAAGAGGATTACAATTCCGGAGATAAGGAATCATGAGTGGTTTCTGAAGAATCTCCCGGCCGATCTCGTAGACGAAAAGGCAATGAATAACCAATACGAAGAGCCTGATCAACCAATGCAAACCAGTGAAGAAATCATGCAGATAATAGCTGAAGCTGGCCTTCCTGCAGCCGGGACACAGAGCCTCAACCAATACCTTACTGGCAGCCTTGATATCGATGATGATATGGAAGACGACGAAGAGAGCGATCCTGATCTTGATCTGGATATCGACAGCAGTGGAGAAGTTGTGTATGCAATGTAA 1035 46.47 MDRSALTVGPGMDIPIMHDSDRYELVRDIGSGNFGIARLMRDKQTGELVAVKYIERGEKVSQLVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIQRILNVQYSIPDYVLISPECRHLISRIFVADPTKRITIPEIRNHEWFLKNLPADLVDEKAMNNQYEEPDQPMQTSEEIMQIIAEAGLPAAGTQSLNQYLTGSLDIDDDMEDDEESDPDLDLDIDSSGEVVYAM 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17668923 17672337 + Lsi11G010300.1 Lsi11g01030 674197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01030 344 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lsi11g01030 344 SMART serkin_6 23 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01030 344 ProSiteProfiles Protein kinase domain profile. 23 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01030 344 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E-LIKE 14 61 - -
Lsi11g01030 344 MobiDBLite consensus disorder prediction 315 334 - -
Lsi11g01030 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Lsi11g01030 344 SUPERFAMILY Protein kinase-like (PK-like) 15 285 IPR011009 -
Lsi11g01030 344 Gene3D Phosphorylase Kinase; domain 1 1 64 - -
Lsi11g01030 344 MobiDBLite consensus disorder prediction 315 336 - -
Lsi11g01030 344 PANTHER SERINE/THREONINE KINASE 64 337 - -
Lsi11g01030 344 Pfam Protein kinase domain 66 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01030 344 PANTHER SERINE/THREONINE KINASE 14 61 - -
Lsi11g01030 344 Gene3D Transferase(Phosphotransferase) domain 1 78 266 - -
Lsi11g01030 344 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E-LIKE 64 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01030 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - csv:101209176 635.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00574 Lsi11g01030 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02056 Lsi-Chr1:28699084 Lsi11g01030 Lsi-Chr11:17668923 9.42E-161 dispersed
Lsi01g00790 Lsi-Chr1:6166591 Lsi11g01030 Lsi-Chr11:17668923 6.07E-136 transposed
Lsi01g01927 Lsi-Chr1:24036838 Lsi11g01030 Lsi-Chr11:17668923 1.96E-70 transposed
Lsi01g01981 Lsi-Chr1:26284394 Lsi11g01030 Lsi-Chr11:17668923 4.48E-10 transposed
Lsi07g01247 Lsi-Chr7:18215035 Lsi11g01030 Lsi-Chr11:17668923 3.14E-28 transposed
Lsi10g00574 Lsi-Chr10:8367092 Lsi11g01030 Lsi-Chr11:17668923 0 transposed
Lsi10g00314 Lsi-Chr10:5033307 Lsi11g01030 Lsi-Chr11:17668923 3.14E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84040 PF00069 Pkinase 2.10E-53 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01030 Lsi_Chr11 FPKM 18.294355 21.910885 21.171129 21.676474 16.105858 16.148329 15.340084 24.206776 22.951748 23.858812