Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01034 ATGGAGAACAACAAGATCAAGATCAAGAACAAATACCTGTTACCACTAATTCTCGTGTCCCTCTTCATCCAACTGTCCAATTCTTCTCAGCCACATTTCCACAAACACTTTGTGTTCATCCATGGATCCTGCCATGGCGCCTGGTCCTGGTTCAAACTCCTCCCACTCCTCGAATCCTCCGGCCAGCGCATCACCGCCCTCGACTTGGCCACCTCCGGAATCGACTTCCGGCAGCCGGACTCCGTCCGATCCATTTCCCAGTACTTCCAGCCTCTGACTGAGTTCATGTCGGCTCTCCCTCATCATAAAAAGGTGATCCTCGTCGGGCATAGCCTCGGCGGATTGGCCATAGCACAAGCCATGGAGGACTTTCCGGCGAGGATTTCCGCCGCCGTTTTCGTCACTGCTGTGATGCCCGGTCCGGCCCTGAACATATCGATGATTTATGGGAAGGTGTTCGAGAGGAATGAATCGATGATGGATAGCGTTTACTCGTACGGCGATGGCCCCAATCGGCCTCCTACTGCCTTCGTCTTTGGGCCGCGCTTTTCGGCTTCCAAAGTTTATCAGCTCAGCCCACCTGAGGATTTAACACTGGCGACAATGTTAATGAGACCAGTACCATTGTTTAGCGAAAAAGACATGTCCGATGAATTGAAGCTGTCGGAGGAAAATTATGGTTCAGTTAAACGAGTTTTCGTCATGTCGGAAAAGGACTTGGTTGGTGATATAGATTTTCAACGGTGGATGATTGAGAAGAACCCACCTGATCGTGTGGTGGGGATTGAAGGATCAGATAATATGGTGATGATGTCTAAGCCTTTCGAGCTGTGGGCCCATCTTGAACTCATTGCTCAATACTACCCTTAG 870 50.23 MENNKIKIKNKYLLPLILVSLFIQLSNSSQPHFHKHFVFIHGSCHGAWSWFKLLPLLESSGQRITALDLATSGIDFRQPDSVRSISQYFQPLTEFMSALPHHKKVILVGHSLGGLAIAQAMEDFPARISAAVFVTAVMPGPALNISMIYGKVFERNESMMDSVYSYGDGPNRPPTAFVFGPRFSASKVYQLSPPEDLTLATMLMRPVPLFSEKDMSDELKLSEENYGSVKRVFVMSEKDLVGDIDFQRWMIEKNPPDRVVGIEGSDNMVMMSKPFELWAHLELIAQYYP 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17829396 17831517 - Lsi11G010340.1 Lsi11g01034 674201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01034 289 Pfam Alpha/beta hydrolase family 37 279 IPR000073 -
Lsi11g01034 289 Gene3D alpha/beta hydrolase 33 288 IPR029058 -
Lsi11g01034 289 SUPERFAMILY alpha/beta-Hydrolases 35 282 IPR029058 -
Lsi11g01034 289 PANTHER ESTERASE PIR7A-RELATED 21 287 - -
Lsi11g01034 289 PANTHER METHYLESTERASE FAMILY MEMBER 21 287 IPR045889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01034 - - - csv:101221751 451.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01007 Lsi-Chr1:8344095 Lsi11g01034 Lsi-Chr11:17829396 3.76E-68 dispersed
Lsi01g01008 Lsi-Chr1:8351252 Lsi11g01034 Lsi-Chr11:17829396 2.17E-52 dispersed
Lsi11g01034 Lsi-Chr11:17829396 Lsi11g01039 Lsi-Chr11:17873764 2.06E-65 proximal
Lsi03g00176 Lsi-Chr3:2334061 Lsi11g01034 Lsi-Chr11:17829396 1.74E-52 transposed
Lsi03g00250 Lsi-Chr3:3131702 Lsi11g01034 Lsi-Chr11:17829396 1.54E-19 transposed
Lsi07g00944 Lsi-Chr7:11769248 Lsi11g01034 Lsi-Chr11:17829396 3.38E-52 transposed
Lsi08g00030 Lsi-Chr8:826071 Lsi11g01034 Lsi-Chr11:17829396 8.01E-36 transposed
Lsi01g01005 Lsi-Chr1:8322557 Lsi11g01034 Lsi-Chr11:17829396 2.34E-54 wgd
Lsi10g00318 Lsi-Chr10:5124845 Lsi11g01034 Lsi-Chr11:17829396 1.47E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01034 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01034 Lsi_Chr11 FPKM 18.589743 20.68284 5.819826 5.817732 9.672937 9.274007 9.423549 33.16098 33.909069 33.181114