Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01036 ATGGGATCAAATAGAGACAAAATTTATAATTTAACCTATTTCAAGATTAACGTGAGATTGAGCAAGGAGGCTTGCGAAGAATATGTTGAGGAATTGGAGAAACTTGGCCACAAATTGATGGAATTGATCACCGTTAGCTTGGGATTACCAGCGGAAAGTAATGTGAGACTGAATCAATATCCATCGTGCCCATCGCCGGAGTTAGCTCTCGGCGTCGGCCGCCACAAGGATTCTAGAGTCTTGACAGTGCTCTCCCAAGACGATGTTGGAGGGCTTGAAGTGAAAAGGAAGAAAGATGGAGAGTGGGTTCCAGTCAAACCTATACCAAATTCTTACATTGTGAATGTCGGAGATATTATTCAGAACTTTTTAAAGCACTCTTGTACTAATAGGTTTGGAGCAATGAGAAGTATGAGAGTGTGGAGCACATGGTCA 435 42.3 MGSNRDKIYNLTYFKINVRLSKEACEEYVEELEKLGHKLMELITVSLGLPAESNVRLNQYPSCPSPELALGVGRHKDSRVLTVLSQDDVGGLEVKRKKDGEWVPVKPIPNSYIVNVGDIIQNFLKHSCTNRFGAMRSMRVWSTWS 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17852243 17853129 - Lsi11G010360.1 Lsi11g01036 674203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01036 145 Pfam 2OG-Fe(II) oxygenase superfamily 53 121 IPR044861 -
Lsi11g01036 145 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 18 122 - -
Lsi11g01036 145 PANTHER DIRIGENT PROTEIN 18 122 - -
Lsi11g01036 145 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 50 145 IPR005123 -
Lsi11g01036 145 SUPERFAMILY Clavaminate synthase-like 22 121 - -
Lsi11g01036 145 Gene3D - 6 142 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01036 - - - csv:101209423 154.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01036 Lsi-Chr11:17852243 Lsi11g01038 Lsi-Chr11:17861645 5.29E-49 dispersed
Lsi11g01035 Lsi-Chr11:17834632 Lsi11g01036 Lsi-Chr11:17852243 1.01E-54 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g477 . . . . . . . . Cmo19g00644 . . . . . . . Cpe15g00508 Bhi05g01158 . . . Hepe06g0397 . . . . . . . . . . . . . . Csa07g00790 . . . . . Bda14g00528 . . . . . . . Cma11g01775 Cma19g00626 . Car19g00478 . . . . . . . . . . . . . . . . Lsi11g01036 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01036 Lsi_Chr11 FPKM 0.760218 0.0 0.6261 0.704843 0.227121 0.536446 0.0 7.250476 7.443285 8.375408