Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01038 ATGGGAGCCCTTGAGGAGTTCGATCAAGCTTTCATCCAACACCCCGAGCACTGCCCCAAGCTCGCCGTCTCCGACGCCGACGGGGTCCCCACCATCGACCTCTCTCCGATCTTCAACTCCCACGGCGGCGATTTTCCCCGCGATCTGGTCCGACAAATCGCCTCTGCTTCCAGGGACTGGGGATTTTTTCTGGTGGTCAACCACGGCGTCCCTCTGGAGAAGCGGCGGCGGATTGAGGCTGCTGCTCGGGAATTTTTCGGGCAGAGTTTGGAAGAGAAGAGGAAAGTGAGGAGAGATGAAGGGGTTGTGACCGGCTATTTTGATACAGAGCTAACCAAGAACGTCAGAGATTGGAAGGAGGTGTTTGATTTCGTGGTGGCAGATCCGACCGTCGTTCCGGCGTCGCCGGAGCCGGAGGACAACGAGTTGACTCAGTGGACAAATCAATGGCCGGAATACCCACTAGAATTCAGGGAGACTTGCATTGAATACGTTGAGGAATTGGAGAAACTTGGCCACAAATTGATGGAACTAATCGCCGTTAGCTTGGGATTGCCAGCAGAAAAGTTTCAAGATTATTTCAAAGAGCAGACAAGTTTTGTGAGACTGAATCACTATCCGTCATGTCCATCTCCGGAGCTGACTCTCGGTGTTGGCCCCCACAAGGACCCCGGCGTCTTGACAGTGCTTGCCCAAGACGACGTCAAAGGATTGGAAGTGAAAAGGAAGAGAGATGGAGAGTGGATTCAGATCAATCCCGTACCTGATTCTTATGTTGTGAACGTCGGGGATATCACTCAGGTTTGGAGCAATGAGAAGTATGAGAGTGTGGAGCACAGGGCTATGGTGAATAGCAAAAAGGAAAGATATTCCTTTGCTTTCTTCTTGAACCCATCTCATTCCACCATTGTTGAGCCTTTGGAAGAGCTCATTGATCCCCAAAACCCTCCCAAATACAAATCTTACTCTTGGGGGAAGTTTCTCACCAATAGAATGCGCAGCAACTTCAAGAAACTTAATGTTGACAATATTCAAGTTTCTCATTTCAAGATCACCAATTAG 1062 49.81 MGALEEFDQAFIQHPEHCPKLAVSDADGVPTIDLSPIFNSHGGDFPRDLVRQIASASRDWGFFLVVNHGVPLEKRRRIEAAAREFFGQSLEEKRKVRRDEGVVTGYFDTELTKNVRDWKEVFDFVVADPTVVPASPEPEDNELTQWTNQWPEYPLEFRETCIEYVEELEKLGHKLMELIAVSLGLPAEKFQDYFKEQTSFVRLNHYPSCPSPELTLGVGPHKDPGVLTVLAQDDVKGLEVKRKRDGEWIQINPVPDSYVVNVGDITQVWSNEKYESVEHRAMVNSKKERYSFAFFLNPSHSTIVEPLEELIDPQNPPKYKSYSWGKFLTNRMRSNFKKLNVDNIQVSHFKITN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17861645 17866700 - Lsi11G010380.1 Lsi11g01038 674205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01038 353 Pfam 2OG-Fe(II) oxygenase superfamily 199 298 IPR044861 -
Lsi11g01038 353 Pfam non-haem dioxygenase in morphine synthesis N-terminal 29 152 IPR026992 -
Lsi11g01038 353 PRINTS Isopenicillin N synthase signature 221 242 - -
Lsi11g01038 353 PRINTS Isopenicillin N synthase signature 323 341 - -
Lsi11g01038 353 PRINTS Isopenicillin N synthase signature 53 70 - -
Lsi11g01038 353 PRINTS Isopenicillin N synthase signature 286 304 - -
Lsi11g01038 353 SUPERFAMILY Clavaminate synthase-like 6 337 - -
Lsi11g01038 353 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 5 343 - -
Lsi11g01038 353 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 298 IPR005123 -
Lsi11g01038 353 Gene3D - 2 339 IPR027443 -
Lsi11g01038 353 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 5 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01038 - - - csv:101209423 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00562 Lsi-Chr9:5943825 Lsi11g01038 Lsi-Chr11:17861645 6.96E-62 dispersed
Lsi09g01917 Lsi-Chr9:28019376 Lsi11g01038 Lsi-Chr11:17861645 4.40E-50 dispersed
Lsi10g00189 Lsi-Chr10:3164150 Lsi11g01038 Lsi-Chr11:17861645 3.18E-26 dispersed
Lsi11g00232 Lsi-Chr11:2329103 Lsi11g01038 Lsi-Chr11:17861645 2.19E-19 dispersed
Lsi11g01035 Lsi-Chr11:17834632 Lsi11g01038 Lsi-Chr11:17861645 0 dispersed
Lsi11g01036 Lsi-Chr11:17852243 Lsi11g01038 Lsi-Chr11:17861645 5.29E-49 dispersed
Lsi11g01038 Lsi-Chr11:17861645 Lsi07g00320 Lsi-Chr7:3427303 5.85E-56 dispersed
Lsi11g01038 Lsi-Chr11:17861645 Lsi11g01040 Lsi-Chr11:17886117 1.41E-130 proximal
Lsi11g01037 Lsi-Chr11:17860552 Lsi11g01038 Lsi-Chr11:17861645 3.01E-74 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01038 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01038 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.026449 0.0