Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01039 ATGCAAAAACTTTTGCTACCATTTTTCCTTCTCATTTTCCTCTCTTTCTCTTCTCAAACACAAAGCTCAATTCCCCTCCCTGATGACTCCCAATCGAACAAGTCACACTTTGTGCTCGTCCATGGCGCCTGTCTCGGCGCTTGGTCTTGGTACAAGGTCACAACCTTGTTGCAAACCGTTGGTCACAATGTCACCACACTCGACATGGCTGCCGCGGGAATCGACCTAACACAGCCCCAGTCGTTGACATCGCTTACCGAGTACTTCCAGCCATTGTTGAGCTTCATGGAATCCCTGGCAACTGACGAGAAGATCGTTCTCGTCGGACACAGCCTAGGTGGCCTCGGAATCTCGATGGCCATGGAGCAATTCCCCGAGAAAATCTCTGCTGCCATTTTTGTAACTGCAGCCATGCCCGGTCCATTGGGGCTTTCTTCCATAGGGGAACAGAAGAGAATATTTGGAATGTACAGTGGCATGTACATAGAGGAGGAGAAATCCAAGGGTTCTAATTCAGATCTTTTTCTATTTTCCCAAGAAGATTTAGAAACCAAGCTTTTCCCACTGTCTCCACCTGAGGAGCTACAACTAAGCAAAGAGAAATATGGGTCAGTCAAAAGGGCTTTCATTATATCAGAGAAGGACCAAATGACCCCCAAGATCATGGTGTGGGCTATGCTGATTTTAAACAAGCCTGATCTTGTGGCTGAGGTTAAAGGATCAGATCACATGGTCATGACTTCAAAGCCTCTTGAACTTGCTCAACAACTCTCCACCATAGCTCAACAATTTGCTTCTTCCTCTTCTTCTACTTATATTATTGATATGTAA 831 45.85 MQKLLLPFFLLIFLSFSSQTQSSIPLPDDSQSNKSHFVLVHGACLGAWSWYKVTTLLQTVGHNVTTLDMAAAGIDLTQPQSLTSLTEYFQPLLSFMESLATDEKIVLVGHSLGGLGISMAMEQFPEKISAAIFVTAAMPGPLGLSSIGEQKRIFGMYSGMYIEEEKSKGSNSDLFLFSQEDLETKLFPLSPPEELQLSKEKYGSVKRAFIISEKDQMTPKIMVWAMLILNKPDLVAEVKGSDHMVMTSKPLELAQQLSTIAQQFASSSSSTYIIDM 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17873764 17876866 - Lsi11G010390.1 Lsi11g01039 674206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01039 276 SUPERFAMILY alpha/beta-Hydrolases 31 259 IPR029058 -
Lsi11g01039 276 Pfam Alpha/beta hydrolase family 37 255 IPR000073 -
Lsi11g01039 276 PANTHER ESTERASE PIR7A-RELATED 23 263 - -
Lsi11g01039 276 PANTHER METHYLESTERASE FAMILY MEMBER 23 263 IPR045889 -
Lsi11g01039 276 Gene3D alpha/beta hydrolase 29 265 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01039 - - - cmo:103495205 370.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00926 Lsi-Chr2:9021451 Lsi11g01039 Lsi-Chr11:17873764 1.76E-73 dispersed
Lsi08g00030 Lsi-Chr8:826071 Lsi11g01039 Lsi-Chr11:17873764 4.29E-28 dispersed
Lsi10g00318 Lsi-Chr10:5124845 Lsi11g01039 Lsi-Chr11:17873764 6.51E-63 dispersed
Lsi11g01034 Lsi-Chr11:17829396 Lsi11g01039 Lsi-Chr11:17873764 2.06E-65 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g491 . . . . . . . . . Cmo11g01336 Cma02g00433 . Car02g00288 . . . . . . . . . . . Cla02g00571 Cam02g0601 Cec02g0601 Cco02g0612 Clacu02g0597 Cmu02g0595 Cre02g0924 . . . . . . . Cme01g00018 . . . . . . . . Sed01g0330 Cmo02g00435 . . . Car11g01077 . . . Bhi10g02066 Tan05g1380 Cmetu11g1580 . Hepe08g1056 . . . . . . . . . Lsi11g01039 . Chy01g00023 Cme11g00501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01039 Lsi_Chr11 FPKM 2.200997 1.862416 0.0 0.0 0.0 0.0 0.0 0.0 0.100526 0.0