Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01040 ATGGCGGTGGTACTACAATCGACAATGGAGGAAGAGAAGAAGCCACTAAGGGCGGCGACGGAACCTCCTAACAAGCAAGTTCAAGAGATTGAAGAAGAAAGCAGAGTAAATGAAGAACCACCTTCAAAAAGTAGCCGAGGAGGAGGAGGAGGAGGCTGGGGAGGTTGGGGATTCTCTGCGTTTTCTGTTCTCTCAGATCTCCAGAAAGCCGCCGAAGAGATCTCCCGAAATGATCATGAGGCGGTTTCGTATCTAGTTGAGAGGTTTAAGTATGATTTAGCGCATTCTGTACTGGGGAAATGCTGTTCGGCTGCTGCTGCTGCTCAGACAGCAGCTAAAAGCATTGTAGACTTGAAAAATGAAGATGAGCATGTGGAGCCTTCCGAGGAGAAAGAAGTAGAAGATTCTGCAGCTGAAAGTGAAAGTGAAGACGAGAATGATAAGCTACGAAAATCTGCCTTGGATAAATTAGAGAAGGCCAGCGAGGATTCAGGCTTAAAGGTTCTGGATACTTCTGTGGAGAATATAGCTTCGGGAGCATGGAAAGCCCTGGGAAGTGCATTGAGAGGGGGCAGTGATTTCGTTCACAAGCTTGAGAATTCAGCTGCAAATATTGCAGAAACCATTCAACATCAAGGAATACCAGCAGCAGCTGGTTCTGTTGCACCATCATTGTTGGAGGAAACAGTTATAATTTCAATGATAGTAGGGTATTTAAAAAAGAACTTAGCAGGCCGAGCAAAGTTGGTCCAGCTACAAGGACATAGAGGGAAGGCTCTCACAACAAAGGGAATGGAAGTTCTTGAGCTCGTTGGAAGGGAAACCATGGACTTACTGATTACAGAAACTGGGATTGAAGTTGAGAAGACCTCTAATGAGAGCGAACCACATGCCGAGAAGGATCAATTAGAAGATGATGAAGTGACATTTGATAGATGCTTTTATATATATGGAGGTCCAGAACAGTTAGAGGAGTTGGAGGCCTTGTCCAACCACTATACTTTATTATATAACCGAAGGAAAGGAAAATTATCTCAGGACCAGAAATCTGTTTTTGATGGAAAGCTTAAACAGGTCCAACAAATTTTCAGTTTGAGTAATGAAATTGAAGGAAACAGTTTAAAATCAGAAAAAGGTAAAAAGTTAGAAGTTGGGGAAGAGGGAAATGAAGAGATGAAGAGTTTATATGATTCTAGTGTCAACAAGGCTGCTGAAATGGCCGCAGGGTATGGAAGTTCCATAACCGAACTTCCTGTTTCTGAAATAAGGCAAAGGACTGTCGACAGATTAGAATCACTTCATTCGGAAGGAGTCCATAGACTCTCAGAAATGTGTTATTTTGCGGTGTCTCAATTGCTGATGCTTGGAAAATCCATTATAAAAAATGCTAACAAAGTTGAGGATGACGACGACGACTACGATGAGGATGTTGTAAAAATCCAATGGCCCGAAGATTCTGTTGAAAAAGCTGAAATCATTAGATTAAAGGCTCTATCCATGACAGGATATGTAGATGCACTATCCAAAAGCTTCATTACAGGCCTTTCTGACGTGTCAAAAGCTTATCAAGCTGCCATGAGCGCTGCCCCCGCTGATTCTCACAAAAGTCCTCTGCAAACATCAGTACAAGACAAGGCCAACGCCTTCTCCGAGCATCTTCTCGCCGATCAAACCACAGCTTTCTGCAAAATCCAGGATGGGCTTCAATACTTGTCTTATCTTTTGAACAACTCCTGCAAGACTTTTGTGGAAGATTGGCATGGAAAAGAAAACAAGAATTGCGCCACCATGGGAGAGACCTTGGCCATGGATTCTACCTTCATCCAACCCATCGAGCACCGCCCCAAGCTCAAACCCCTCGACCCCATTGATGATGAAGTTCCAACCATAGATCTCTCCATCTCCCTCTCTCGCACCACCCAACAGCTCGTCTCTGAAATAGCCTCTGCTTGCCAGAACTGGGGTTTCTTCCAGGTAATCAACCATGGAGTTCCCCTCGAGCTGCTCGCGCGAATTGAGAAAGCTGCCAAGTTGTTTTTTGATCAGTCAATGGACGAGAAGAGGAAGGTGAAGAGAGATGCAGCTAATGCTATGGGGTTCCATGACGGTGAGAATACGAAAAACGTTAGGGATTGGAAGGAAGTGTTTGATTTCTTGGTTAAGGATGGGACGTTGATTCCGGCTTCGCATGACCCAAATGACAAGGAATTGAGGGTATTGTGTAATCAGTGGCCGCAATATCCCCCTGGGTTTAGGGAAACATGTGAGGAGTATGCAAGAGAGTTGGAATTGCTAGCTCATAAGCTACTGGGGCTGATTTCTTTGAGTCTAGGCTCACCTAGTGCCGATGGATTGAAGGGCTATTTCAACGACAAGCAAACAAGCTTGGTAAGGTTGAATCGCTATCCTCCATGCCCGTCTCCGGATCTCGTGCTTGGCATTGGCCGTCACAAAGATGCTGGTGCCTTGACAATCCTTGCTCAAGATGGTGTTGGAGGGCTGCAAGTGAAGAGAAAATCAGATGGTGAATGGATTCCTGTCAGACCAATCCCAAATGCATATATTGTTAACATTGGTGATGTTGTTCAAGTTTGGAGCAATGACAAATATGAAAGTGTGGAGCACAGGGTGGTGGTGAATACTGAGAAAGAAAGGTTTTCGTTTCCATTCTTCTTCTTTCCAGCTCACCATATGATGGTGAAGCCATTGGAGGAGCTTGTGAATGAGCAAAACCCACCAAAATACAGAGAATACAACTTTGGGAAGTTCTTTGTTTCCAGAAACCGCAGTGATTTCCAGAAGCAAAAAGTGGAAAACATCCAAATTGACCACTTTAAGCTGCTTGTGTGA 2850 44.35 MAVVLQSTMEEEKKPLRAATEPPNKQVQEIEEESRVNEEPPSKSSRGGGGGGWGGWGFSAFSVLSDLQKAAEEISRNDHEAVSYLVERFKYDLAHSVLGKCCSAAAAAQTAAKSIVDLKNEDEHVEPSEEKEVEDSAAESESEDENDKLRKSALDKLEKASEDSGLKVLDTSVENIASGAWKALGSALRGGSDFVHKLENSAANIAETIQHQGIPAAAGSVAPSLLEETVIISMIVGYLKKNLAGRAKLVQLQGHRGKALTTKGMEVLELVGRETMDLLITETGIEVEKTSNESEPHAEKDQLEDDEVTFDRCFYIYGGPEQLEELEALSNHYTLLYNRRKGKLSQDQKSVFDGKLKQVQQIFSLSNEIEGNSLKSEKGKKLEVGEEGNEEMKSLYDSSVNKAAEMAAGYGSSITELPVSEIRQRTVDRLESLHSEGVHRLSEMCYFAVSQLLMLGKSIIKNANKVEDDDDDYDEDVVKIQWPEDSVEKAEIIRLKALSMTGYVDALSKSFITGLSDVSKAYQAAMSAAPADSHKSPLQTSVQDKANAFSEHLLADQTTAFCKIQDGLQYLSYLLNNSCKTFVEDWHGKENKNCATMGETLAMDSTFIQPIEHRPKLKPLDPIDDEVPTIDLSISLSRTTQQLVSEIASACQNWGFFQVINHGVPLELLARIEKAAKLFFDQSMDEKRKVKRDAANAMGFHDGENTKNVRDWKEVFDFLVKDGTLIPASHDPNDKELRVLCNQWPQYPPGFRETCEEYARELELLAHKLLGLISLSLGSPSADGLKGYFNDKQTSLVRLNRYPPCPSPDLVLGIGRHKDAGALTILAQDGVGGLQVKRKSDGEWIPVRPIPNAYIVNIGDVVQVWSNDKYESVEHRVVVNTEKERFSFPFFFFPAHHMMVKPLEELVNEQNPPKYREYNFGKFFVSRNRSDFQKQKVENIQIDHFKLLV 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17886117 17911596 - Lsi11G010400.1 Lsi11g01040 674207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01040 949 SUPERFAMILY Clavaminate synthase-like 605 932 - -
Lsi11g01040 949 MobiDBLite consensus disorder prediction 1 51 - -
Lsi11g01040 949 Gene3D - 594 934 IPR027443 -
Lsi11g01040 949 PANTHER BAT2 DOMAIN PROTEIN 9 229 - -
Lsi11g01040 949 PANTHER BAT2 DOMAIN PROTEIN 256 576 - -
Lsi11g01040 949 MobiDBLite consensus disorder prediction 120 150 - -
Lsi11g01040 949 MobiDBLite consensus disorder prediction 26 40 - -
Lsi11g01040 949 MobiDBLite consensus disorder prediction 127 142 - -
Lsi11g01040 949 Pfam 2OG-Fe(II) oxygenase superfamily 795 894 IPR044861 -
Lsi11g01040 949 PRINTS Isopenicillin N synthase signature 817 838 - -
Lsi11g01040 949 PRINTS Isopenicillin N synthase signature 647 664 - -
Lsi11g01040 949 PRINTS Isopenicillin N synthase signature 882 900 - -
Lsi11g01040 949 Pfam non-haem dioxygenase in morphine synthesis N-terminal 627 746 IPR026992 -
Lsi11g01040 949 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 793 894 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01040 - - - csv:101222694 793.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01037 Lsi-Chr11:17860552 Lsi11g01040 Lsi-Chr11:17886117 3.02E-33 dispersed
Lsi11g01040 Lsi-Chr11:17886117 Lsi05g01526 Lsi-Chr5:23070336 3.96E-60 dispersed
Lsi11g01038 Lsi-Chr11:17861645 Lsi11g01040 Lsi-Chr11:17886117 1.41E-130 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g494 . . . . . . . . . Cmo11g01335 . . . . . Cpe04g00259 . . . . . . . . Cla02g00570 Cam02g0600 Cec02g0600 Cco02g0611 Clacu02g0596 Cmu02g0594 . . . . . . . . Cme01g00017 . . . . Bpe15g00885 . . . . . . . . Car11g01076 . . . . . . . . . . . . . . . . . Lsi11g01040 . Chy01g00022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01040 Lsi_Chr11 FPKM 8.60051 10.469367 12.501151 11.846915 12.695816 11.283727 13.752856 24.22949 23.610361 26.834417