Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01041 ATGAAGGCCATGGCGACCCTGCAGGATCTGATCGAGGAGGCTAAACTTCGAACGGTTTGGTGGGCTCTGTGTATTTTCGCGATTTCATACTTTTTGACCCATACTAGCAAGTCAATGTGGATGAATGTACCCCTAGCAATTCTATTAGTTTCTGCACTACGTATTCTGTTCAATGAGGTAGAGTTCTGTAGAAAGGTCCGACCTATTCATCAACAGACATACTTATCTCACTTGGAGAAGAAGCAGTTATCTGTTAATGACTCACGCCTTTCTTCAGCGCTTCCTCCACCAAGATGGAAAAGGAAAATTGATTCTCCTGCTGTGGAGGCTGCAATGAAGGATTTCATAGATAAAATATTGAAGGATTTTGTGGTCGACTTGTGGTATTCAGAAATAACCCCAGACAAGGAGTTTCCTGAGCAGATACATGCGTTGATCATGGACGCCCTTGGTGAGATAGCAGTTAGGGTGAAAGAGATAAACCTTGTTGACTTGCTCACGAGGGATGTTGTTGAATTAGTAGGTGATCACTTGGACCTTTTTAGAAGAAACCAAGCTGCCATCGGTGTTGATGTTATGGGAACACTGTCTTCTGAGGAGAGGGACGAAAGGTTGAAACACCATCTTATGGCTTCGAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGAGTGTTGACTTCAGTACTGAGACCAAGAGAAACTCAATGTCCTGTTGTTCGATCCATTGCTCGAGAACTTTTAACATGCTTGGTGGTGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAGTTGATCGAATGTGTAGTCCTTGCCACTAGAGCTGAGAATGACTCTGTGGTAGGCGGTCAAAAACAAACTTATTCGTCAGATCATGACAAAGACCATTCTTCTACTGCTGGATTCGTGCCTGATGAAGATTTGAACAAAAGGAACTCATCTTTAAATCCAGGAAATGGTTCAGAGCTCGCGAAAGGTAACAATAAAAAAGAAATAATCTCAGATTACATGTTCCAGGATGAGCCTTTGCAACTGAGACATGGTGATTGGGGCCGTGCATTGAATGCAGCAACCCAAAGGAGAACTGAAGTTCTTATGCCAGAAAATCTTGAAAACATGTGGACTAAAGGACGAAACTATAAGAAGAAAGAAAATAAGATCATTAAAGTAGGAGATTCTGAGCCTATGGCTACAACAAAGAATTCTGGAACGGGTATCATGCAGCCTGCAATAACAACAACAATGAGAGATGAAATGTCGACTGACAAGCATCATTCTTCTACTGGGCCAGAAGAAAAGGCAATAGTTAGGAGAACACCTGTAAAACATTCTGATCTCCTTTTGACATCCAAACCGAGTAGTGAGAACAAAATTGGTTTTCAGTCTTCTCTGGAACTTCAGAAGGATTCATCTATCGATGGGAAGTTTATTGCTAATGAATTAAAGGATGTTGATAATCTTACTCCTGCTAGTGCAACTAAAATTCAACTTAAGAGATCCAATAGTACTTCTGCTTTGAAAACTGAAATTAGTGTAGAAAAGACTTCTACAGAAGGTGGAAGATCTATTATATCAGATTTCTATGGTCCCAGTTTTGGCAAGCATGGTGAAGAGCCCCTTTCTAAGAGTGCCTCGGATATGGTTATCCAAAAAGAAGGACTACTTGTTCCCAAACTTAGGAGTCGGGTAATGGGTGCATACTTTGAGAAGCTTGGCTCAAAATCTTTTGCTGTATATTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTTTGTCAAGAGAAGGTACCGAAATTTTGAGCGACTACATCGACATCTTAAAGATATACCTAACTATACACTGCACCTGCCTCCCAAACGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAACGTTGCATTCAACTTGACAAATATTTGCAGGAGCTATTATCAATTGCAAATGTTGCTGAGCAGCATGAAGTATGGGATTTTTTAAGTGTTTCCTCAAAGAACTATTCGTTTGGAAAATCTTCCTCAGTGATGAGAACATTAGCAGTCAATGTGGATGATGCTGTGGACGACATTGTACGCCAGTTTAAAGGGGTTTCAGATGGTTTCATGCGTAAAGTTGTTGGTTCAACCTCACCTGATGAATCTTGTACCTCGTCAAATTATGACAGGAAGTTTTCATTTAATTCAGCAGACTTAAGCAGACATGTTTCTGCACAATATAATTTAGAAATAGCTAATAACATATCTGACGAGGAAGGTGAGCGAATTGAAAGTCGAAATCGTGAAAAGGTTAGTGGATGGCATTCGGATAATGAATTAAACTCTAAGAGCTTTCCCCCTCGTGTGATCAAACGTGGTGAAGAGTTGGATAAATTAGTTGTTGATAAGAAGAATGATCTAGAATTGAGGTCTGGGGCCAGCCATGGAGGATTTTCGCAAATTTCATATCATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTCAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAACAGGAGAGGCTGGATAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCTATTGATGACTGGATTGTCAGGCAGATACACTGGCTACGGAGAGAGGACATCATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTCTGGCCCAATGGAATTTTCTTTATACAATTGAGGAATGCTCAAAGTGAAGATGATGATTCTCAATCTACTACTAGCCGAACTGATGGAAGTAAGATCCCTAAGCCTGGATCATTTGAGCTGCAGCTCGAGGCTGCTCGCAGAGCTAGCGATGTCAAGAAAATGCTTTTTGCTGGCGCTCCATCACCATTGGTAAGCTTGATAGGGCACAAGCAATACAAAAGATGTGCAAAAGATATTTACTACTTCACTCAGTCTACCGTCTGTGTGAAGCAACTTGGGTATGGATTACTCGAATTATTGCTTGTATCGCTTTTTCCCGAGCTACGTAATTTAGTTCTGGAGATTCATGATAAGTCGCACGTCTCGCAACCAGTTTAG 3126 41.17 MKAMATLQDLIEEAKLRTVWWALCIFAISYFLTHTSKSMWMNVPLAILLVSALRILFNEVEFCRKVRPIHQQTYLSHLEKKQLSVNDSRLSSALPPPRWKRKIDSPAVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPEQIHALIMDALGEIAVRVKEINLVDLLTRDVVELVGDHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLMASKELHPALVSPESEYKVLQRLMSGVLTSVLRPRETQCPVVRSIARELLTCLVVQPLMNFASPGCINELIECVVLATRAENDSVVGGQKQTYSSDHDKDHSSTAGFVPDEDLNKRNSSLNPGNGSELAKGNNKKEIISDYMFQDEPLQLRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYKKKENKIIKVGDSEPMATTKNSGTGIMQPAITTTMRDEMSTDKHHSSTGPEEKAIVRRTPVKHSDLLLTSKPSSENKIGFQSSLELQKDSSIDGKFIANELKDVDNLTPASATKIQLKRSNSTSALKTEISVEKTSTEGGRSIISDFYGPSFGKHGEEPLSKSASDMVIQKEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANVAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDDAVDDIVRQFKGVSDGFMRKVVGSTSPDESCTSSNYDRKFSFNSADLSRHVSAQYNLEIANNISDEEGERIESRNREKVSGWHSDNELNSKSFPPRVIKRGEELDKLVVDKKNDLELRSGASHGGFSQISYHMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGIFFIQLRNAQSEDDDSQSTTSRTDGSKIPKPGSFELQLEAARRASDVKKMLFAGAPSPLVSLIGHKQYKRCAKDIYYFTQSTVCVKQLGYGLLELLLVSLFPELRNLVLEIHDKSHVSQPV 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17942650 17952455 + Lsi11G010410.1 Lsi11g01041 674208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01041 1041 SMART PXA_3 105 290 IPR003114 -
Lsi11g01041 1041 Pfam PXA domain 105 281 IPR003114 -
Lsi11g01041 1041 MobiDBLite consensus disorder prediction 323 337 - -
Lsi11g01041 1041 Pfam Sorting nexin C terminal 867 1002 IPR013937 -
Lsi11g01041 1041 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 5 1040 - -
Lsi11g01041 1041 ProSiteProfiles PXA domain profile. 105 288 IPR003114 -
Lsi11g01041 1041 ProSiteProfiles PX domain profile. 571 683 IPR001683 GO:0035091
Lsi11g01041 1041 SUPERFAMILY PX domain 579 682 IPR036871 GO:0035091
Lsi11g01041 1041 SMART PX_2 571 679 IPR001683 GO:0035091
Lsi11g01041 1041 PANTHER PX SERINE/THREONINE KINASE PXK 5 1040 - -
Lsi11g01041 1041 MobiDBLite consensus disorder prediction 294 341 - -
Lsi11g01041 1041 Gene3D - 574 688 IPR036871 GO:0035091
Lsi11g01041 1041 Pfam PX domain 602 678 IPR001683 GO:0035091
Lsi11g01041 1041 CDD PX_SNX19_like_plant 573 677 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01041 K17925 SNX13; sorting nexin-13 - csv:101222929 1907.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02796 Lsi-Chr2:34177841 Lsi11g01041 Lsi-Chr11:17942650 9.59E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01041 Lsi_Chr11 FPKM 0.0 0.0 0.108225 0.0 0.0 0.0 0.0 0.294855 0.143745 0.075723