Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01067 ATGGGAGCCCATTTGAGCAAAAAGTCTTCAGTTCCATCCATTAATCTATCCCCTAATTTGGCTTACACGACGGAGCTGAGTTCTTATGAAGCGGCTTGTAAGGCAGACGCCGATCTACAATCGTTTGATTCCACACTCCAAGCTCGTACTAACCAAGCAATCAATACCATCGCTGTTGGCGTTGAGGTTAGAGCACTTTCCTTTGATTCTCTTAAAGAAATCACAGAGTGTTTATTAGAAATGAATCAGGAAGTTGTGAAAGTAATTTTGGCTTGTAAGAAAGATATATGGAATAATCAAGAGTTGTTTGAATTAGTTGAGGAGTATTTTGAGAATAGTTTGCAGTCTTTAGATTTCTGTACAGAATTGGAGAAGTGTTTGAAAAAGGCTCGTGATAGCCATCTTTTGATTGTAATGGCAATTCAACAATTTGAGGAGGAAGTTAAAATGGTAGATGGGAATGGGTATGTTAAAACTCTACAAGAGTTGAGGAATTTCAAGGCTTCTGGTGATCCATTTACAGATGAGTTTTTCCAAATATTCAATTCTGTTTATAGACAACAGATTGGGATGTTAGAGAAACTATTAATAAGGAAGAACAAGCTTGACAAGAAACTCAAATCCATGAGCACTTGGAGGAAGGTGTCTAGCATAATCTTTGTAGCCACTTTTGCCACTGTGTTGATATGTTCAATTGTGGCAGCTGCCATGGCAGCTCCACCAGTTGCAGCGGCAATGGCGGCGGCAGCTTCGATTCCGGTGGGATCAATGGGGAAATGGATTGACTCATTATGGAAGAACTATGAGGCTGTTTTGAGGGGACAGAAGGAAGTGCTAAGCTCAATGCAAGTGGGAACATATGTAGCCATTAAAGATATGGATAACATTAGAGTGCTTATTGATAAATTGACAGTGGAGTTGGAATCACTTTTGAAGAAAGCAGATTTTGCCATTGAAGAGGAAGCTGTGAAGCTTGGGGTGGAAGATATGAAGAAGAAACTGGGGCAGTTCATGAAGAATGTGGAGGATTTGGGAGCACAGGCTGATACTTGCAGCAGAGACATTAGGAGGGCTAGAACAGTGGTTTTACAAAGGATCATAAAGCATCCTAACCACTGA 1119 40.57 MGAHLSKKSSVPSINLSPNLAYTTELSSYEAACKADADLQSFDSTLQARTNQAINTIAVGVEVRALSFDSLKEITECLLEMNQEVVKVILACKKDIWNNQELFELVEEYFENSLQSLDFCTELEKCLKKARDSHLLIVMAIQQFEEEVKMVDGNGYVKTLQELRNFKASGDPFTDEFFQIFNSVYRQQIGMLEKLLIRKNKLDKKLKSMSTWRKVSSIIFVATFATVLICSIVAAAMAAPPVAAAMAAAASIPVGSMGKWIDSLWKNYEAVLRGQKEVLSSMQVGTYVAIKDMDNIRVLIDKLTVELESLLKKADFAIEEEAVKLGVEDMKKKLGQFMKNVEDLGAQADTCSRDIRRARTVVLQRIIKHPNH 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18620273 18621391 - Lsi11G010670.1 Lsi11g01067 674234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01067 372 Pfam Protein of unknown function (DUF677) 39 366 IPR007749 -
Lsi11g01067 372 Coils Coil 293 320 - -
Lsi11g01067 372 PANTHER UPF0496 PROTEIN 3-RELATED 1 369 IPR007749 -
Lsi11g01067 372 Coils Coil 327 347 - -
Lsi11g01067 372 PANTHER UPF0496 PROTEIN 1 1 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01067 - - - csv:101213854 654.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00657 Lsi11g01067 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00475 Lsi-Chr9:4998182 Lsi11g01067 Lsi-Chr11:18620273 4.66E-06 dispersed
Lsi10g00338 Lsi-Chr10:5341404 Lsi11g01067 Lsi-Chr11:18620273 3.97E-119 dispersed
Lsi10g00657 Lsi-Chr10:9152328 Lsi11g01067 Lsi-Chr11:18620273 1.74E-108 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g553 . . . . . Bpe12g00073 . . . Cmo11g01319 . . . . Sed05g3639 Cpe04g00248 . Bhi05g01192 Tan02g0838 Cmetu11g2382 . Hepe02g0535 . . Cla02g00548 Cam02g0572 Cec02g0574 Cco02g0585 Clacu02g0572 Cmu02g0568 Cre02g0899 Cone12ag1134 Cone8ag1181 Cone3ag1139 Cone10ag1150 Lsi10g00657 . . Cme01g01476 . . Bda15g00019 . . . . . . . . . . Car11g01063 . . . . . . . . . . . . . . . . . Lsi11g01067 . Chy01g00825 Cme11g00217
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000668 4 2 2 2 4 3 3 3 3 2 3 3 4 3 3 4 3 8 4 3 3 3 6 3 3 3 4 3 3 1 98
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01067 Lsi_Chr11 FPKM 6.32754 6.931081 12.924927 10.21609 15.137547 17.823353 16.323538 13.720948 12.665298 11.932009