Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01094 ATGGACGAGAAGCGCCGCGACACCACAAATTTACCGCCCAATACCACCGATTCTCCCTCATCGGAGCCGCCTTCTTCTCGCCGTCGTGCTGGAGCTCAGAAGCGAAAGGCCAGCGCTCTCGGTGGCTCTAATTCCTTATCCGGGCCCTCGAAACGCGTTACTCGCGACAAATCTGCGCTTTCGCATCTTCCAAATCATAACGGCCCCTTCACCAGAGGTCGACTTGGCCCTAACAATGGCGCTGGGGCAGCATCGGCTAACGCGTCTGGAGGTCTCGCCGCCGGATCACTTAAGGCGGAGGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGACGCGTTGGTCGCTGCGGCGGAGGAATTGAATAAGGCGAGTAGATTGGCGAATCTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCTATTAAATCTCGAGATGCAAATGTTCATGTCGTTCCGAATCATTGCGGTTGGTTTTCATGGACAAAAGTCCACCCAATTGAGGAACGCACAATGGCTACTTTTTTCAGTGGAAAGGCTGGCACTCGAAGTCCTGATATTTATATTGAGATACGTAATTGGATTATGAAAAAATTCCACGCAAATCCTAGTACGCAGATTGAATCAAAAGATTTATCAGAGCTGGAAGTTGGAGAACTAGATGCTAGACAGGAGGTGATGGAGTTTCTAGACCATTGGGGTTTGATTAATTTTCACCCTTTCCTAGCCGCAGATTCAATTTCAACAAATGATGCTGACGATGAAAATCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACATTAGAATCCTGCCCATCTATTGTTCCAAAGATTAATGCTACCACTGCAGCTCCACCTAGATTGCTTCGAGAATCTGCAATTTCTGAAGAGTTGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCGGATATGTCTTCATCAGATTTTATTCTCATGGAGTCTGCTGAGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCAGAACATGTGGCCACCAAAACAAAAGCCCAATGTATATTGCACTTCATTCAAATGCCAATTGAGGATACCTTTCTTGAATCTGAAGGCAATGTTGAAGTCAGTGCAAAAGAAACTATTGTTCCACCTATAATTGAAAATGATTCATCAGTTCCTTCTGATATCACTGAATCAATGGATAATAAGGCTACTGGAAAAGAGGCTTCAAATGTAGAAACTGCGAGCAAGGAAGATACAGGTGAGGTAAAAGTTGGGCAGGATAATTCGAAATCAGAGGATGTTGAAGAAAAAGCTTCTTTAGGTAACTCTAAATCAGAAGATGGTGATCAGAAGGCTTCTGAAGACATTGCCTTGAATGCTTTGAGGGAGGCATTTGAAGCCATTGGTTATGTATTAACACCTGAGCACTCACTTTCGTTTGCTGATGTAGGGAACCCTGTCATGGCACTGGATTACCTTCAGTTTAGTTATTATCATGCTTATCATATTTATAGGTGGAGCAGAAATGCTGAAGCCTGTACTCTTTGTCCCCTTCCAGGAGCTGCATTCCTTGCACGCTTAGTTGGATCAGATGTCGCCAGTGCATCAGCCCATTTTTCTTTGAAAAGCATATCTCAGAAATCTCCCAGTTTAGAACTGACTACAAGGCACTGCTTTATTTTAGAAGATCCACCGGATGACAAGAAGGCACAAGCTAATTCAGAGAGCGTTGACAATGTGGAAGCTCAGAAAAATGATACGGAACAGTGTGCGAAACAGAGCGAAGACAATTCTTCTTCAGTCTTAGATGACGGAGCCTTATCAACTAATAACAGTAATAACAAAAGTGGAGAATCTGTGACAAAGGAAACAACGGAGAATGGAAATTCTTCAGATGCTATTAGAGAACACAATCCAACCACCAATCATGGTTCAGATAGAACAAGTAATTTGAAAGAATTGGGAGCACAAGAATTGCCGAAGGATGTAAAAACAGGCATTGTGAAGGAATCTGAAAATTTAGAATCAAAATTGACATCAAATCCAGTTGAAAAGTTGGGAGAAGGAACTCCTGTTGAAAAGCCATCACAATCTATGTTGTCATCAAAGGATGTGCATATGTCAGATTTGCAGCATGCTGAAAGATCTGAGATTCAGAAACAAGATCCATCTCATTCTGCCAAAACTTCAAAAGAATTAGATGATGAGCCAAATCGTTTACTGTCCGGGGATGAGCCTCAACCAATAATTTCTGCTAATTCTGTGAAAGAAGCCTCAAACGATGTAGCTATGGTGTCTGATTCTCACGATAAGAATGAACCTGGACAAACTGAAACATCTAAATCTGTGGTTGAACAGGAAGCAAGCAAGGTCTCTGATTTTTTGCCCTCATCAGAGAATGCAACTCCACAACCTGCCAAACCAAATTCAGTTGTTGAAAGAGGAGCAGGAACTTCCTCATATACTGTGATGTATGTTTCTGGGGAAGAAAAGGATCAACAAGAACTGCAAAAGGAATATGATAATCAAAGCAAGGACAATAAAGAAGAAAACTCCAATAGTACGAGTAAAAAAGAAGATAAAATTGGTAAGCTGAAGCGTGCTGCAGTTACGACACTGTCAGCAGCTGCAGTGAAGGCAAAAATTCTAGCTAATCAGGAAGAGGACCAAATCCGTCAACTCGCCATGATATTAATCGAAAAACAGCTACATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGAGATGGATAATGTGACAATGAGAGTGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAGGAACGTGCACAGATAATTGCCGCTCGACTCGGCATACCTGCTTCATCGTCACGAGGTGTAGCACCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGCCCCAAGGCCTCCAATGAGCATGACGCCCCAAAGGCCACCGACTTCGGGACCACCGGGTATGGCTGCTACTAACCCTAACCCTCAATACACAACCACCAGTACAACAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACGCACTTTCTTCTGTTGGGACCAAGTAA 3153 43.32 MDEKRRDTTNLPPNTTDSPSSEPPSSRRRAGAQKRKASALGGSNSLSGPSKRVTRDKSALSHLPNHNGPFTRGRLGPNNGAGAASANASGGLAAGSLKAEGSLLHSEVQRGDALVAAAEELNKASRLANLEASFEADFEAIKSRDANVHVVPNHCGWFSWTKVHPIEERTMATFFSGKAGTRSPDIYIEIRNWIMKKFHANPSTQIESKDLSELEVGELDARQEVMEFLDHWGLINFHPFLAADSISTNDADDENQKDSLVEKLFHFETLESCPSIVPKINATTAAPPRLLRESAISEELADFDLCSECFNNGKFDSDMSSSDFILMESAEVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDTFLESEGNVEVSAKETIVPPIIENDSSVPSDITESMDNKATGKEASNVETASKEDTGEVKVGQDNSKSEDVEEKASLGNSKSEDGDQKASEDIALNALREAFEAIGYVLTPEHSLSFADVGNPVMALDYLQFSYYHAYHIYRWSRNAEACTLCPLPGAAFLARLVGSDVASASAHFSLKSISQKSPSLELTTRHCFILEDPPDDKKAQANSESVDNVEAQKNDTEQCAKQSEDNSSSVLDDGALSTNNSNNKSGESVTKETTENGNSSDAIREHNPTTNHGSDRTSNLKELGAQELPKDVKTGIVKESENLESKLTSNPVEKLGEGTPVEKPSQSMLSSKDVHMSDLQHAERSEIQKQDPSHSAKTSKELDDEPNRLLSGDEPQPIISANSVKEASNDVAMVSDSHDKNEPGQTETSKSVVEQEASKVSDFLPSSENATPQPAKPNSVVERGAGTSSYTVMYVSGEEKDQQELQKEYDNQSKDNKEENSNSTSKKEDKIGKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMILIEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGIPASSSRGVAPTLPANRMAMNFPNSAPRPPMSMTPQRPPTSGPPGMAATNPNPQYTTTSTTISGSSFRPANQDALSSVGTK 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19075248 19086401 + Lsi11G010940.1 Lsi11g01094 674261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 433 473 - -
Lsi11g01094 1050 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 769 783 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 38 65 - -
Lsi11g01094 1050 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 543 1007 - -
Lsi11g01094 1050 SMART sant 336 384 IPR001005 -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 1 87 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 729 763 - -
Lsi11g01094 1050 PANTHER SWI/SNF COMPLEX-RELATED 543 1007 - -
Lsi11g01094 1050 Pfam SWIRM domain 152 237 IPR007526 GO:0005515
Lsi11g01094 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 338 386 IPR017930 -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 405 473 - -
Lsi11g01094 1050 Gene3D - 155 239 IPR036388 -
Lsi11g01094 1050 SUPERFAMILY Homeodomain-like 156 238 IPR009057 -
Lsi11g01094 1050 Coils Coil 599 619 - -
Lsi11g01094 1050 Gene3D - 335 386 - -
Lsi11g01094 1050 PANTHER SWI/SNF COMPLEX-RELATED 44 512 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 991 1050 - -
Lsi11g01094 1050 CDD SANT 356 381 IPR001005 -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 997 1015 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 11 27 - -
Lsi11g01094 1050 Pfam Myb-like DNA-binding domain 338 380 IPR001005 -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 799 838 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 584 838 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 1016 1050 - -
Lsi11g01094 1050 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 44 512 - -
Lsi11g01094 1050 ProSiteProfiles Myb-like domain profile. 332 382 IPR001005 -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 679 693 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 597 674 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 411 432 - -
Lsi11g01094 1050 Pfam SWIRM-associated region 1 893 971 IPR032451 -
Lsi11g01094 1050 Coils Coil 848 875 - -
Lsi11g01094 1050 MobiDBLite consensus disorder prediction 853 886 - -
Lsi11g01094 1050 ProSiteProfiles SANT domain profile. 335 386 IPR017884 -
Lsi11g01094 1050 SUPERFAMILY Homeodomain-like 335 388 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01094 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101218015 1595.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01656 Lsi-Chr6:26821244 Lsi11g01094 Lsi-Chr11:19075248 6.51E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01094 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 2.158043 0.0 0.0 0.0