Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01095 ATGCCTTCCCGCAGAAGGACCCTCTTGAAGGTCATAATCCTTGGGGATAGCGGATATGTGAATAAGAAGTTTAGTAATCAATACAAAGCCACCATTGGAGCTGATTTTTTGACTAAGGAGGTGCAATTCGAAGATAGACTTTTCACTTTGCAGGCCTTGGCCATGGAGGCTGCATCTTCTCATATATGGGATACAGCAGGCCAGGAACGATTCCAAAGTCTTGGTGTTGCTTTTTACCGAGGTGCCGATTGCTGCGTTCTGGTGTATGATGTCAATTCAATGAAATCATTTGACAACCTTAACAACTGGCGGGAAGAATTCCTTATCCAGGCAAGCCCTTCCGATCCGGAAAATTTTCCCTTTGTTGTTTTAGGAAATAAAGTTGATGTTGATGGTGGAAACAGTAGAGTTGTCTCAGAGAAAAAGGCACGAGCTTGGTGTGCGTCAAAAGGAAATATCCCATACTTTGAAACTTCTGCCAAAGAAGGCATTAACGTAGAAGAAGCCTTCCAATGCATTGCAAAAAATGCCCTCAAGAGTGGGGAAGAGGAAGAGATATACTTACCCGACACCATCGATGTTGCGAGCAACAATCAGCCGAGATCATCTGGATGCGACTGCTGA 624 44.23 MPSRRRTLLKVIILGDSGYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQALAMEAASSHIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVASNNQPRSSGCDC 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19086951 19090269 - Lsi11G010950.1 Lsi11g01095 674262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01095 207 SMART ras_sub_4 6 180 - -
Lsi11g01095 207 ProSiteProfiles small GTPase Rab1 family profile. 3 207 - -
Lsi11g01095 207 SMART ran_sub_2 14 207 - -
Lsi11g01095 207 PRINTS Transforming protein P21 ras signature 23 39 - -
Lsi11g01095 207 PRINTS Transforming protein P21 ras signature 51 73 - -
Lsi11g01095 207 PRINTS Transforming protein P21 ras signature 155 177 - -
Lsi11g01095 207 PRINTS Transforming protein P21 ras signature 117 130 - -
Lsi11g01095 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 179 IPR027417 -
Lsi11g01095 207 SMART rab_sub_5 9 180 - -
Lsi11g01095 207 SMART rho_sub_3 11 180 IPR001806 GO:0003924|GO:0005525
Lsi11g01095 207 PANTHER RAB FAMILY 1 207 - -
Lsi11g01095 207 ProSiteProfiles small GTPase Ras family profile. 1 207 IPR001806 GO:0003924|GO:0005525
Lsi11g01095 207 Gene3D - 2 190 IPR027417 -
Lsi11g01095 207 Pfam Ras family 19 178 IPR001806 GO:0003924|GO:0005525
Lsi11g01095 207 TIGRFAM small_GTP: small GTP-binding protein domain 21 173 IPR005225 GO:0005525
Lsi11g01095 207 CDD Rab7 9 183 - -
Lsi11g01095 207 PANTHER RAS-RELATED PROTEIN RABG3F 1 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01095 K07897 RAB7A; Ras-related protein Rab-7A - csv:101218255 386.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00673 Lsi11g01095 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02797 Lsi-Chr2:34192530 Lsi11g01095 Lsi-Chr11:19086951 1.85E-120 dispersed
Lsi10g00673 Lsi-Chr10:9351279 Lsi11g01095 Lsi-Chr11:19086951 6.80E-88 dispersed
Lsi11g01095 Lsi-Chr11:19086951 Lsi05g00047 Lsi-Chr5:980031 7.67E-32 dispersed
Lsi11g01095 Lsi-Chr11:19086951 Lsi05g00016 Lsi-Chr5:270512 5.15E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01095 Lsi_Chr11 FPKM 0.231765 0.173818 1.347434 2.101245 0.846155 1.489787 1.304291 0.420048 0.27816 0.245965