Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01096 ATGGCTCAGCCTCTCATCAAGAAGGACGACGACCGCGATGACGAAGCCGAGTATTCTCCGTTTTTGGGGATTGAGAAGGGTGCTGTTCTTCAGGAAGCTAGGGTTTTTAATGATCCTCAGTTAGATCCAAGAAGATGCTCTCAGGTTATCACGAAGCTTTTGTACCTTCTGAATCAGGGTGAAAACTTCACAAAGATTGAAGCCACCGAAGTCTTCTTTGCTGTCACAAAGCTTTTCCAGTCAAGAGATATAGGGTTGAGGAGAATGGTTTACTTGATAATAAAGGAGCTTTCTCCGTCTGCTGATGAGGTTATTATTGTGACTAGCTCCCTAATGAAGGACATGAATAGTAAGACTGATATGTATCGGGCAAATGCCATTCGTGTGCTTTGTCGGATTACAGATGGAACCCTTCTGACCCAGATCGAGAGGTATCTGAAACAAGCAATTGTAGATAAGAATCCTGTGGTAGCTAGTGCTGCCTTAGTCAGTGGTATTCATTTGCTTCAGACAAATCCAGAAATTGTCAAGCGGTGGAGTAATGAGGTTCAGGAAGCTGTTCAGTCAAGGGCAGCACTTGTGCAATTTCACGCTCTTGCCTTGCTTCACCAAATACGTCAAAATGATCGTCTAGCTGTTAGCAAACTGGTCACTAGTCTGACAAGGGGTACTGTTCGGTCTCCATTGGCTCAATGCCTCTTGATTCGCTATACCAGTCAGGCATGTAATTTCCCGGTTATTCGCGAATCAGCTACCAGTACTCAAACTGGTGATCGGCCCTTTTACGATTTTCTTGAGGGTTGTCTGCGCCACAAAGCAGAGATGGTGATCTTTGAAGCTGCCAAAGCAATCACTGAGCTGCATGGTGTAACAAGCAGAGAATTGACACCAGCCATTACTGTCCTTCAGCTGTTTTTAAGCTCCTCAAAGCCAGTACTGAGATTTGCTGCTGTCCGGACTTTAAATAAGGTGGCAATGACTCATCCAATGGCTGTCACTAACTGCAATATTGATATGGAGAGCTTGATTTCTGATCAAAACAGAAGCATTGCAACTCTTGCAATAACAACACTTCTGAAAACAGGAAATGAATCAAGTGTGGACCGTCTAATGAAGCAGATAACTAACTTTATGTCTGATATTGCGGATGAGTTTAAAATTGTCGTGGTAGAAGCTATTAAATCTTTGTGTTTGAAGTTCCCATTGAAGTATAGATCTCTGATGAATTTCCTTAGCAACATTCTCAGAGAAGAAGGGGGCTTTGATTATAAAAAAGCTATTGTGGATTCAATTGTAATTCTTATAAGAGATATTCCTGATGCAAAAGAGAGTGGGTTGCTTCATTTGTGCGAATTTATAGAAGATTGTGAATTCACCTATCTTTCCACACAGATCCTTCACTTTCTGGGGATTGAAGGACCCAAAACCTCTGATCCTAGCAAATACATACGATACATATACAACCGAGTACATCTTGAAAATGCAACTGTTCGTGCCAGTGCTGTGAGTACATTAGCAAGATTTGGTGTTACAGTTGAATCATTGAAGCCTCGAATATTTGTTCTGTTGAGACGATGCCTCTTTGACAATGATGACGAGGTTCGAGATAGGGCCACCCTATATTTAAAAACTCTAGGAGGTGATGATACAGTTACCGAAACTGAGAAGGATGCCACTGACTTTCTTTTTGGCTCTCTGGATGTCCCACTGATCAATCTAGAAACAAGTTTGAAGAATTATGAGCCTTCTGAAGAACCTTTTGACATTGATTCCGTGCCCAAGGAAATCAAGTCTCAGCCACTTGCTGAGAAGAAAGCCCCAGGTAAAAAGCCAGCTGGGCTTGGTGCTCCTCCAAGTGGCCCAACAGCCACTGTTGATGCATATGAAAAGCTGCTTTCCTCAATTCCAGAATTTGCAGACTTTGGGAAACTTTTCAAGTCTTCAGCACCTGTGGAGCTTACAGAAGCAGAAACGGAATATGCAGTTAATGTTGTTAAGCACATTTTTGATAGCCATGTTGTGTTTCAGTACAACTGCACAAATACAATTCCAGAGCAACTACTTGAAAATGTTATTGTTGTTGTTGATGCGTCTGAAGCAGAGGAATTCTCTGAAGTGATATCCAGGCCTCTCAGATCACTTCCTTATGATTCACCCGGACAAACTTTTGTGGCATTTGAGAAACCTGAAGGGGTCACCGCTGTTGGGAAATTTTCAAACATGTTGAGATTTATTGTTAAAGAGGTTGACCCAAGTACAGGTGAGGCAGAAGAAGATGGTGTGGAGGATGAATATCAGTTGGAGGATTTGGAGGTGGTTGCAGCCGATTACATGTTGAAAGTAGGGGTATCTAATTTTAAGAATGCCTGGGACAGCTTGGGTCCAGATTGTGAGCGAGTTGATGAATACGGCCTTGGACCAAGGGAGAGTTTGGTGGAAGCTGTAGGTGCTGTCATAAATCTTCTCGGCATGCAGCCGTGTGAGGGTACAGAGGCTGTCGCAAGCAACTCAAGATCACACACCTGCCTATTATCTGGTGTATACATTGGCAACGTGAAGGTACTTGTGCGATTATCGTTTGGAATCGATTCATCAAGAGAGGTTGCGATGAAGCTGGCCGTTAGATCAGATGACGAAGTCGTTAGTGATGCCATCCATGAGATAGTTGCCAGCGGCTAG 2679 43.11 MAQPLIKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGENFTKIEATEVFFAVTKLFQSRDIGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQACNFPVIRESATSTQTGDRPFYDFLEGCLRHKAEMVIFEAAKAITELHGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIKSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLARFGVTVESLKPRIFVLLRRCLFDNDDEVRDRATLYLKTLGGDDTVTETEKDATDFLFGSLDVPLINLETSLKNYEPSEEPFDIDSVPKEIKSQPLAEKKAPGKKPAGLGAPPSGPTATVDAYEKLLSSIPEFADFGKLFKSSAPVELTEAETEYAVNVVKHIFDSHVVFQYNCTNTIPEQLLENVIVVVDASEAEEFSEVISRPLRSLPYDSPGQTFVAFEKPEGVTAVGKFSNMLRFIVKEVDPSTGEAEEDGVEDEYQLEDLEVVAADYMLKVGVSNFKNAWDSLGPDCERVDEYGLGPRESLVEAVGAVINLLGMQPCEGTEAVASNSRSHTCLLSGVYIGNVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVASG 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19098239 19104969 + Lsi11G010960.1 Lsi11g01096 674263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01096 892 Gene3D - 774 890 IPR012295 -
Lsi11g01096 892 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 775 889 IPR032154 -
Lsi11g01096 892 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 777 889 IPR009028 GO:0006886|GO:0016192|GO:0030117
Lsi11g01096 892 SUPERFAMILY ARM repeat 29 591 IPR016024 -
Lsi11g01096 892 MobiDBLite consensus disorder prediction 600 621 - -
Lsi11g01096 892 PANTHER COATOMER SUBUNIT GAMMA 1 892 - -
Lsi11g01096 892 Gene3D - 23 321 IPR011989 -
Lsi11g01096 892 SUPERFAMILY Clathrin adaptor appendage domain 622 776 IPR013041 -
Lsi11g01096 892 PANTHER COATOMER SUBUNIT GAMMA 1 892 IPR017106 -
Lsi11g01096 892 Pfam Adaptin N terminal region 29 545 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lsi11g01096 892 PIRSF Gamma-COP 7 890 IPR017106 -
Lsi11g01096 892 Gene3D Coatomer, gamma subunit, appendage domain 621 773 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lsi11g01096 892 Pfam Coatomer gamma subunit appendage platform subdomain 627 772 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lsi11g01096 892 Gene3D - 335 556 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01096 K17267 COPG; coatomer subunit gamma - csv:101218494 1665.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00358 Lsi11g01096 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00358 Lsi-Chr10:5583232 Lsi11g01096 Lsi-Chr11:19098239 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g582 Blo02g00800 . . Bda08g00925 . Bpe12g00078 . . Cmo19g00674 . Cma02g00404 . Car02g00264 Car20g00739 Sed05g2322 Cpe04g00125 Cpe15g00534 Bhi05g01224 Tan02g0807 Cmetu01g1965 . Hepe02g0514 . . Cla02g00528 Cam02g0546 Cec02g0547 Cco02g0553 Clacu02g0547 Cmu02g0542 Cre02g0873 Cone12ag1147 Cone8ag1195 Cone3ag1158 . Lsi10g00358 . Chy11g00388 Cme01g01429 Blo04g00508 Blo13g00555 . Bda14g00549 Bpe15g00871 . . . Sed01g0309 Cmo02g00409 Cmo20g00865 . Cma19g00660 . Car19g00503 . Cpe05g01253 Bhi10g02020 Tan05g1319 Cmetu11g0171 . Hepe08g1023 . . . . . . . . . Lsi11g01096 Csa02g01249 Chy01g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001661 4 2 3 0 2 2 3 2 2 2 2 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 4 3 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01096 Lsi_Chr11 FPKM 89.124222 105.339676 71.867363 71.718704 64.916924 67.816864 67.712883 65.590363 68.570114 66.92028