Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01098 ATGTCTGCTTCCGAGCTTAAGGAGCGGCATGTGGCGGCTATTGAGACGGTCAATTCTCTCAAAGAGCGCTTGAAGCAGAAGAGGCATTCGTTGCTCGACACCAATGTAGCTGGGTATGCGAGGTCTCTGGGGAGGAATCCCGTCTGTTTTGGAGCTACGGATCTTGTGTGCTGTAGGACTTTGCAGGGTCATACTGGAAGGGTGTATTCGTTGGATTGGACCTCAGAGAGGAATAGAATTGTTAGTGCGTCTCAAGATGGTCGTTTAATAGTGTGGAATGCTCTAACAAGCCAGAAGACTCACTCCATAAATCTACCTTGTCCTTGGGTCATGACCTGTGCTTTCTCTCCTTCTGGTCTATCTGTAGCAGGTGGTGGTCTTGACAGTGTTTGTTCTATTTTCAACCTCAACTCTCCAACTGACAGGGATGGGAATCTGCCAGTGGCTAGAACGCTTAGCGGGCATAAAGGATATATTTCTTCTTGTCAGTATGTTCCAGATGAGGATACTCACCTCATTACTGGTTCTGGGGATCAGACGTGTGTCTTATGGGACATTACTACTGGGCTTCGAACCTCTGTTTTTGGAGGTGAATTTCAGTCAGGACATGCAGCAGATGTATCGAGTGTATCTATTAGTGGATCCAATTCCAGAACATTTATTTCTGGTTCTTGTGATGCAACTGCTCGCCTGTGGGACACTCGGGTAGCTAGTCGAGCAGTTCAGACATTTCATGGGCATGAAGGAGATGTTAATGCAGTGAAGTTCTTTCCAGATGGTAACCGGTTTGGGACTGGTTCTGATGATGGAACTTGCAGATTATTTGATATCAGAACTGGGCATGAACTCCAAGTTTATCATCAGCTGCACAGTGATAATACCAACTCACACGTAACCTCTATTGCATTCTCTATATCTGGGAGACTTTTGTTTGCTGGATACAAAAATGGTGATTGCTATGTGTGGGACACCTTACTCGCAAAGATGGTTTTGAACTTGGGAGGACTTCAGAACTCACACGAAGGGCGAATTAGTTGCTTGGGCTTGTCTGCTGATGGAAGTGCTTTATGTACAGGAAGCTGGGATTCAAACCTGAAGTTTCACTGCAAGGATTGTGTTTATTGTATGCATGCAAACGCATTGTTCTTGCTTGTTGAAATCCTTCAAATTCTTGGTAAGTAA 1182 45.09 MSASELKERHVAAIETVNSLKERLKQKRHSLLDTNVAGYARSLGRNPVCFGATDLVCCRTLQGHTGRVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHSINLPCPWVMTCAFSPSGLSVAGGGLDSVCSIFNLNSPTDRDGNLPVARTLSGHKGYISSCQYVPDEDTHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHAADVSSVSISGSNSRTFISGSCDATARLWDTRVASRAVQTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHELQVYHQLHSDNTNSHVTSIAFSISGRLLFAGYKNGDCYVWDTLLAKMVLNLGGLQNSHEGRISCLGLSADGSALCTGSWDSNLKFHCKDCVYCMHANALFLLVEILQILGK 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19110511 19114528 - Lsi11G010980.1 Lsi11g01098 674265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01098 393 SMART WD40_4 279 323 IPR001680 GO:0005515
Lsi11g01098 393 SMART WD40_4 237 276 IPR001680 GO:0005515
Lsi11g01098 393 SMART WD40_4 96 135 IPR001680 GO:0005515
Lsi11g01098 393 SMART WD40_4 192 233 IPR001680 GO:0005515
Lsi11g01098 393 SMART WD40_4 330 369 IPR001680 GO:0005515
Lsi11g01098 393 SMART WD40_4 145 185 IPR001680 GO:0005515
Lsi11g01098 393 SMART WD40_4 54 93 IPR001680 GO:0005515
Lsi11g01098 393 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Lsi11g01098 393 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Lsi11g01098 393 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Lsi11g01098 393 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Lsi11g01098 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Lsi11g01098 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Lsi11g01098 393 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Lsi11g01098 393 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Lsi11g01098 393 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Lsi11g01098 393 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 368 - -
Lsi11g01098 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Lsi11g01098 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Lsi11g01098 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Lsi11g01098 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Lsi11g01098 393 CDD WD40 57 367 - -
Lsi11g01098 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Lsi11g01098 393 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 368 IPR016346 GO:0007165
Lsi11g01098 393 SUPERFAMILY WD40 repeat-like 54 367 IPR036322 GO:0005515
Lsi11g01098 393 Coils Coil 3 23 - -
Lsi11g01098 393 Gene3D - 3 368 IPR015943 GO:0005515
Lsi11g01098 393 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Lsi11g01098 393 Pfam WD domain, G-beta repeat 295 323 IPR001680 GO:0005515
Lsi11g01098 393 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Lsi11g01098 393 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Lsi11g01098 393 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Lsi11g01098 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Lsi11g01098 393 PIRSF GNBP_B 1 370 - -
Lsi11g01098 393 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01098 K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 - csv:101218729 718.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01098 Lsi-Chr11:19110511 Lsi01g00842 Lsi-Chr1:6715721 5.66E-07 dispersed
Lsi11g01098 Lsi-Chr11:19110511 Lsi07g00496 Lsi-Chr7:5213403 2.12E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007608 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01098 Lsi_Chr11 FPKM 0.507899 0.455844 1.463949 1.529463 1.19332 0.726282 1.14717 2.495246 2.468363 4.34663