Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01100 ATGGCGTTTTCCGGTAGCAATTCGACCCAGATTCATCCTTCCGACGAATCTTCCTCCAGTTCTTCCAAAACTTCTCTATCCAACTTGAAAATCTACGCCGCGATCGGTATAATAGCTGCATGTGTGATTGCGGCTTCTGCTCTGATCTTCCTCTGTATCCGCAGAAGTAGGGACTCGAGAAAGCACAAAATGCGGGTGAAACATAGTTCTGGATTGATTCCATTGGTCTCCAAGGAGATCGCTGAGATTAAAGAGTCCGATCGGACTGCAGATTGCGAGAAAGGGGAAGTTATAAGGGTTGAGAATAAGAAGGAGATTGAGTTCGAGAATGGGGTAGGTAAGAAGAGTCAAGAGAGCGACGTGTCGGGCGGTGGTCGGAGTGACGTGTCGGTGGAGGATCCAAACTTAGGATGGGGACGGTGGTATAGCTTGAAAGAACTGGAAATGGCGACTGATGGGTTTCTTGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCGCCGGACGGTTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCTATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGATGGAGCACAGAGGATGCTTGTGTATGAATTTGTTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCTGTTAGCCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGAACAGCAAAAGGTTTGGCCTATTTGCATGAGGGTTTAGAACCTAAAGTCGTGCACCGCGATATAAAGTCAAGCAACATTCTCTTAGACAGAAAATGGAATGCAAAAGTGTCTGATTTTGGACTTGCAAAACTCTTACAACCTGAAGCCAGCTACGTAACTACTCGTGTAATGGGTACCTTCGGATATGTCTCCCCGGAGTATGCAAGCACAGGCATGCTTAATGAGGGGAGCGATGTATATAGTTTCGGTGTTCTACTTATGGAGATCATTACTGGCAGAAGCCCAATTGACTATTCCAGGCCCCCTGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAAATCGACGTGGGGAAGAGGTTGTAGATCCGTTGATTGAGATTCCACCCTCTCCAAGAACTCTAAAGAGAGTGTTGCTTGTTTGTCTACGCTGCATTGATTTGGATGCCAATAAAAGGCCGAAGATGGGGCAAATCGTTCATATGCTAGAGGCAGATGATTTTCCTTATCGTTCGGAGCTTCGATCTGTGCGAGAGAAAGATAACCAGCCTGCTCGTTTAGACGTGCCGAGTAAACTTCCATTGAAGCATGCTGGTATAGATGACATGGAATCAAGAAAGAGATAA 1413 46.21 MAFSGSNSTQIHPSDESSSSSSKTSLSNLKIYAAIGIIAACVIAASALIFLCIRRSRDSRKHKMRVKHSSGLIPLVSKEIAEIKESDRTADCEKGEVIRVENKKEIEFENGVGKKSQESDVSGGGRSDVSVEDPNLGWGRWYSLKELEMATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCADGAQRMLVYEFVDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNQPARLDVPSKLPLKHAGIDDMESRKR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19137663 19141825 - Lsi11G011000.1 Lsi11g01100 674267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01100 470 CDD STKc_IRAK 160 426 - -
Lsi11g01100 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Lsi11g01100 470 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01100 470 MobiDBLite consensus disorder prediction 438 470 - -
Lsi11g01100 470 Gene3D Phosphorylase Kinase; domain 1 129 229 - -
Lsi11g01100 470 Pfam Protein kinase domain 156 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01100 470 SUPERFAMILY Protein kinase-like (PK-like) 130 426 IPR011009 -
Lsi11g01100 470 PANTHER OS03G0227900 PROTEIN 15 442 - -
Lsi11g01100 470 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Lsi11g01100 470 PANTHER OS01G0323000 PROTEIN 15 442 - -
Lsi11g01100 470 MobiDBLite consensus disorder prediction 1 23 - -
Lsi11g01100 470 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Lsi11g01100 470 SMART serkin_6 154 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01100 Lsi-Chr11:19137663 Lsi11g01627 Lsi-Chr11:24618672 2.49E-154 dispersed
Lsi11g01100 Lsi-Chr11:19137663 Lsi08g01486 Lsi-Chr8:23012388 2.08E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84041 PF00069 Pkinase 1.60E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01100 - - csv:101219201 857.825