Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01100 | ATGGCGTTTTCCGGTAGCAATTCGACCCAGATTCATCCTTCCGACGAATCTTCCTCCAGTTCTTCCAAAACTTCTCTATCCAACTTGAAAATCTACGCCGCGATCGGTATAATAGCTGCATGTGTGATTGCGGCTTCTGCTCTGATCTTCCTCTGTATCCGCAGAAGTAGGGACTCGAGAAAGCACAAAATGCGGGTGAAACATAGTTCTGGATTGATTCCATTGGTCTCCAAGGAGATCGCTGAGATTAAAGAGTCCGATCGGACTGCAGATTGCGAGAAAGGGGAAGTTATAAGGGTTGAGAATAAGAAGGAGATTGAGTTCGAGAATGGGGTAGGTAAGAAGAGTCAAGAGAGCGACGTGTCGGGCGGTGGTCGGAGTGACGTGTCGGTGGAGGATCCAAACTTAGGATGGGGACGGTGGTATAGCTTGAAAGAACTGGAAATGGCGACTGATGGGTTTCTTGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCGCCGGACGGTTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCTATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGATGGAGCACAGAGGATGCTTGTGTATGAATTTGTTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCTGTTAGCCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGAACAGCAAAAGGTTTGGCCTATTTGCATGAGGGTTTAGAACCTAAAGTCGTGCACCGCGATATAAAGTCAAGCAACATTCTCTTAGACAGAAAATGGAATGCAAAAGTGTCTGATTTTGGACTTGCAAAACTCTTACAACCTGAAGCCAGCTACGTAACTACTCGTGTAATGGGTACCTTCGGATATGTCTCCCCGGAGTATGCAAGCACAGGCATGCTTAATGAGGGGAGCGATGTATATAGTTTCGGTGTTCTACTTATGGAGATCATTACTGGCAGAAGCCCAATTGACTATTCCAGGCCCCCTGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAAATCGACGTGGGGAAGAGGTTGTAGATCCGTTGATTGAGATTCCACCCTCTCCAAGAACTCTAAAGAGAGTGTTGCTTGTTTGTCTACGCTGCATTGATTTGGATGCCAATAAAAGGCCGAAGATGGGGCAAATCGTTCATATGCTAGAGGCAGATGATTTTCCTTATCGTTCGGAGCTTCGATCTGTGCGAGAGAAAGATAACCAGCCTGCTCGTTTAGACGTGCCGAGTAAACTTCCATTGAAGCATGCTGGTATAGATGACATGGAATCAAGAAAGAGATAA | 1413 | 46.21 | MAFSGSNSTQIHPSDESSSSSSKTSLSNLKIYAAIGIIAACVIAASALIFLCIRRSRDSRKHKMRVKHSSGLIPLVSKEIAEIKESDRTADCEKGEVIRVENKKEIEFENGVGKKSQESDVSGGGRSDVSVEDPNLGWGRWYSLKELEMATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCADGAQRMLVYEFVDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNQPARLDVPSKLPLKHAGIDDMESRKR | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19137663 | 19141825 | - | Lsi11G011000.1 | Lsi11g01100 | 674267 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01100 | 470 | CDD | STKc_IRAK | 160 | 426 | - | - | |
Lsi11g01100 | 470 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 276 | 288 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g01100 | 470 | ProSiteProfiles | Protein kinase domain profile. | 154 | 433 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01100 | 470 | MobiDBLite | consensus disorder prediction | 438 | 470 | - | - | |
Lsi11g01100 | 470 | Gene3D | Phosphorylase Kinase; domain 1 | 129 | 229 | - | - | |
Lsi11g01100 | 470 | Pfam | Protein kinase domain | 156 | 423 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01100 | 470 | SUPERFAMILY | Protein kinase-like (PK-like) | 130 | 426 | IPR011009 | - | |
Lsi11g01100 | 470 | PANTHER | OS03G0227900 PROTEIN | 15 | 442 | - | - | |
Lsi11g01100 | 470 | ProSitePatterns | Protein kinases ATP-binding region signature. | 160 | 182 | IPR017441 | GO:0005524 | |
Lsi11g01100 | 470 | PANTHER | OS01G0323000 PROTEIN | 15 | 442 | - | - | |
Lsi11g01100 | 470 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lsi11g01100 | 470 | Gene3D | Transferase(Phosphotransferase) domain 1 | 230 | 439 | - | - | |
Lsi11g01100 | 470 | SMART | serkin_6 | 154 | 425 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi11g01100 | Lsi-Chr11:19137663 | Lsi11g01627 | Lsi-Chr11:24618672 | 2.49E-154 | dispersed | |
Lsi11g01100 | Lsi-Chr11:19137663 | Lsi08g01486 | Lsi-Chr8:23012388 | 2.08E-175 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84041 | PF00069 | Pkinase | 1.60E-45 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01100 | - | - | csv:101219201 | 857.825 |