Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01101 ATGACCGTCGGAGCTTCAAAGAAGAGGCAGCGCGTTCAACACTCTGCCTCCACCAGCCGCAACTCCTCCGTCGTCGCTGCCGCCGACTGCTTCCCCTTACCGGATAAGTCCTCAACCGAAGTCTCCAAAAAGCCCCATACTCTCCGCCGTTCTTCATCCTTCTCGTCCATCTCCGCCTTCAACGACGCCTCCACTGCCGACGTTGTTCTCCGTCTTTATTCGGAGGTTACTCCTTTTGATTTGTCCGGTTCCGATTCTCTCTCCTCTTCCGATGTCCATATTTATCTTCATTCCCATGTTCTTCGCCGATCGAAGTACTTTTCTGCTCTGTTGTCCGACCGATGGCAGCCCCAGAAGGATGATGATTCCGGTCCTTTGAGGTTGAGTTTCGGTGTTCCGGCGGCGCAGGGTTCCATGGATGGCCATTTGGCTGTTCTTGAGCTTCTGTATGTTGATGATATGTCGGACGCTATCCATAGCGCGAAAGCTGCGTTGGATCTCCTCCCTGTTGCGCTTAAATTTCTCTTTGAGGATTGTGTGAAATCCTGTGTTCGATTTCTCGAGGCCGTGCCATGGACGGATGAAGAGGAAAAGAGAGTGATGGGGTTAATCCCATTTCTGCAGGAGGAAGAATCGATGGAGCTTCTTGCTAGGGTTTCGCCGGGCCGGAATGATTCTTGCGAGCAAATGTTGCAGGGACTGATTTTGGCTGCTATTCATAATTATCCCAATATGGCTTTCGTAAAGGCATTTGTGGCGAAGCTTTTGAAGGATTTTTCTTCAAAGGAGTCCGCTAAGAGAGTGCTGAAGAGGGCATTCGAGACGAGCTTGAAGGTGGTGAAGGAGTCTTTGGAGGAATATTCAAGCCCAAATTTTAGAGGAGACCATAACGAAACGGAGGCCATTCAAAGGCTCAATTTGCACACTGCAATGACAAATGCTAAGCATTTATCATGGCTGGTTGAGAGGATGATTGAATTAAGGGTGGCTGATGTTGCTGTGGATGAATGGAGTGAACAGGCTTCTTTCACTGCAGATTTACAAAGAGCATTTCGGGACGACGGGTGGAGAGGCATTGTGCCGGGGTTTCCTTCAGTTCTTCTGCGATGTACCTCCAAGCTTGCCAATGCGGTTGCTGCTGGTACCATTTTGGCCAACAAACAGGTTAGAAAGAAGCTCGTAAAGCATTGGCTTCCGGTTCTGCTTGTCAGCAAAGATCATTCACCCTTGCTAGCCAGCAACAAGAACCTGTTTATGGAGCTGGAGGAGACATTCCTGAGAATCATTTCCACACTTCCCCTGTCAGATGCACAGGAGTTGTTGCAGCAGTGCCTTAGCTTCACCCGAAATGTTGACGATTGCCCTCACCTCTTCAAAGCGTTTAACACCTGGTTCCGACGTGCAACTCATCCTCCACAGCCAGAGAAACTTTGA 1434 49.51 MTVGASKKRQRVQHSASTSRNSSVVAAADCFPLPDKSSTEVSKKPHTLRRSSSFSSISAFNDASTADVVLRLYSEVTPFDLSGSDSLSSSDVHIYLHSHVLRRSKYFSALLSDRWQPQKDDDSGPLRLSFGVPAAQGSMDGHLAVLELLYVDDMSDAIHSAKAALDLLPVALKFLFEDCVKSCVRFLEAVPWTDEEEKRVMGLIPFLQEEESMELLARVSPGRNDSCEQMLQGLILAAIHNYPNMAFVKAFVAKLLKDFSSKESAKRVLKRAFETSLKVVKESLEEYSSPNFRGDHNETEAIQRLNLHTAMTNAKHLSWLVERMIELRVADVAVDEWSEQASFTADLQRAFRDDGWRGIVPGFPSVLLRCTSKLANAVAAGTILANKQVRKKLVKHWLPVLLVSKDHSPLLASNKNLFMELEETFLRIISTLPLSDAQELLQQCLSFTRNVDDCPHLFKAFNTWFRRATHPPQPEKL 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19164874 19168130 + Lsi11G011010.1 Lsi11g01101 674268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01101 477 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 7 474 IPR038920 -
Lsi11g01101 477 MobiDBLite consensus disorder prediction 1 23 - -
Lsi11g01101 477 PANTHER EXPRESSED PROTEIN 7 474 - -
Lsi11g01101 477 MobiDBLite consensus disorder prediction 6 23 - -
Lsi11g01101 477 Gene3D Potassium Channel Kv1.1; Chain A 34 288 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01101 - - - csv:101219438 876.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00234 Lsi-Chr9:2448711 Lsi11g01101 Lsi-Chr11:19164874 2.99E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g588 . . . . . . . . Cmo19g00678 . . . . . Sed05g2319 Cpe04g00122 Cpe15g00538 Bhi05g01228 Tan02g0802 Cmetu01g1049 . Hepe02g0510 . . Cla02g00524 Cam02g0542 Cec02g0543 Cco02g0549 Clacu02g0543 Cmu02g0538 Cre02g0869 Cone12ag1150 Cone8ag1198 . . . . . Cme01g01424 Blo04g00510 . . Bda14g00551 Bpe15g00869 . Bma03g00550 . . . . . Cma19g00664 . Car19g00507 . . . . . . . . . . . . . . . . Lsi11g01101 . Chy01g00790 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007587 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01101 Lsi_Chr11 FPKM 26.85108 30.249071 31.825945 29.947325 22.105639 23.607681 24.736429 31.670744 30.463772 30.363113