Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01103 GTGGGCTTGTATTGGGCTTGCTCAAATATCCACAACGAAGCCCAAGCCCAAGACGCAGCGTTTTATCGACCGGAAATCGGAACTGTCTCAGGGAATCCAGCGATCACAAGCTCAGTAGTTTCTGCAGAGAGAAGCATTTGGGAATCCCACCCTGTGAGTAGCGGTGAAAAACATTGGCTTACAACACAGCCACCATTTGCCATGGCTGCGATCTTAGCTCGGAAATCCCTTCTCGCTCTTCGTGCTCGTCACCTTGCCGTCTCTGGACAAGCACTGCAAGGTTCTCCTTTCCATGGTCTTCGGTCAAGTGCACACTTGTACAGTACCAAAAAAGGTTTCGTTTCTGAATGGTGCTATGGAATTTTTTCTTTGCCTAAAATTCTTTTCCATCTCATTACTTCTGCAGAAGATGAAGAAAGAGAGCAGCTTGCCAAGGAGATCTCGAAGGATTGGAGTTCTATTTTTGAGCGTAGCATAAACACACTATTTCTCACTGAAATGGTCCGAGGTCTGATGCTGACTCTTAAATACTTCTTTGAGAAAAAAGTCACTATCAATTATCCATTCGAGAAAGGCCCCCTAAGTCCTCGTTTTCGTGGTGAGCATGCGCTCCGACGTTATCCGACTGGAGAAGAACGATGCATTGCATGCAAACTTTGTGAAGCTATTTGCCCTGCTCAAGCAATCACAATTGAAGCTGAGGAACGGGAAGATGGTAGCCGTAGGACCACAAGGTATGACATTGACATGACCAAATGCATCTACTGTGGGTTCTGTCAAGAGGCATGCCCTGTTGACGCCATTGTTGAAGGACCCAACTTTGAGTTTGCCACAGAGACGCACGAGGAACTTCTCTATGACAAAGAAAAGTTGCTCGAGAACGGAGACCGCTGGGAGACCGAGATTGCAGAGAACCTCAGATCTGAAAGCCTTTATCGCTGA 942 46.92 VGLYWACSNIHNEAQAQDAAFYRPEIGTVSGNPAITSSVVSAERSIWESHPVSSGEKHWLTTQPPFAMAAILARKSLLALRARHLAVSGQALQGSPFHGLRSSAHLYSTKKGFVSEWCYGIFSLPKILFHLITSAEDEEREQLAKEISKDWSSIFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19176932 19182112 + Lsi11G011030.1 Lsi11g01103 674270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01103 313 PANTHER - 134 313 - -
Lsi11g01103 313 SUPERFAMILY 4Fe-4S ferredoxins 187 297 - -
Lsi11g01103 313 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 161 297 IPR010226 GO:0016020|GO:0016651|GO:0051539
Lsi11g01103 313 TIGRFAM NuoI: NADH-quinone oxidoreductase, chain I 170 291 IPR010226 GO:0016020|GO:0016651|GO:0051539
Lsi11g01103 313 Gene3D - 187 312 - -
Lsi11g01103 313 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 244 273 IPR017896 -
Lsi11g01103 313 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 134 313 IPR010226 GO:0016020|GO:0016651|GO:0051539
Lsi11g01103 313 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 214 225 IPR017900 -
Lsi11g01103 313 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 205 234 IPR017896 -
Lsi11g01103 313 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 253 264 IPR017900 -
Lsi11g01103 313 Pfam 4Fe-4S dicluster domain 213 267 IPR017896 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01103 K03941 NDUFS8; NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2] - csv:101219679 407.912
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g591 . . . . . . . . Cmo19g00680 . . . . . Sed04g3932 Cpe04g00120 Cpe15g00540 Bhi05g01230 Tan02g0799 Cmetu01g2454 . Hepe02g0508 . . Cla02g00522 Cam02g0540 . Cco02g0547 Clacu02g0541 Cmu02g0536 Cre02g0867 Cone12ag1151 Cone8ag1201 . . . . . Cme01g01422 . . . . Bpe15g00868 . . . . . . . Cma19g00666 . Car19g00509 . . . . . . . . . . . . . . . . Lsi11g01103 . Chy01g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010764 0 1 0 0 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01103 Lsi_Chr11 FPKM 79.659599 89.684036 66.287209 62.17968 48.597134 42.421417 50.296463 76.917465 82.533279 80.557999