Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01111 ATGGCCTCAAGCTCTTTGAAGCAACAACGACCGGAGACGACGTGGACGGCGAAGCAAAACAAGTTGTTCGAAAAGGCATTGGCGTTGTACGACAAAGAGACGCCTGAGAGATGGCAAAATATCGCCACGGTGGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACACTACGAAGTACTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGAGGCGGCGGCAATAGAGATGAAGAGTTGAGGTTAGTGAAGATGATGAAAAGATAG 288 50.69 MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMKR 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19366872 19367159 - Lsi11G011110.1 Lsi11g01111 674278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01111 95 Gene3D - 7 74 - -
Lsi11g01111 95 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Lsi11g01111 95 SMART sant 11 63 IPR001005 -
Lsi11g01111 95 PANTHER PROTEIN RADIALIS-LIKE 3 1 78 - -
Lsi11g01111 95 CDD SANT 14 61 IPR001005 -
Lsi11g01111 95 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 78 IPR044636 GO:0003700
Lsi11g01111 95 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Lsi11g01111 95 SUPERFAMILY Homeodomain-like 15 68 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01111 - - - csv:101213626 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01108 Lsi-Chr11:19289303 Lsi11g01111 Lsi-Chr11:19366872 1.38E-29 dispersed
Lsi11g01111 Lsi-Chr11:19366872 Lsi04g00956 Lsi-Chr4:9913571 7.41E-20 dispersed
Lsi11g01109 Lsi-Chr11:19332848 Lsi11g01111 Lsi-Chr11:19366872 2.30E-25 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g603 . . Bda06g00933 . . . . Bma12g00512 Cmo19g00684 . . . . . . Cpe04g00117 Cpe15g00548 Bhi05g01236 Tan02g0793 Cmetu01g1593 . Hepe02g0502 . . Cla02g00512 Cam02g0522 Cec02g0526 Cco02g0533 Clacu02g0524 Cmu02g0521 Cre02g0854 . . . . . . . Cme01g01408 . Blo13g00551 . . . . . . . . . . Cma19g00673 . Car19g00514 . . . . . . . . . . . . . . . . Lsi11g01111 . Chy01g00779 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26184 PF00249 Myb_DNA-binding 5.80E-06 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01111 Lsi_Chr11 FPKM 27.634409 29.224361 12.253772 16.699776 7.459495 8.309831 9.27346 5.370348 5.837517 7.979834