Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01112 CAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAACTGTTTCAATAGGGTGGATTACGGCGGCGGATTTCCGCCGCCGGTGTCTGTTCCGGCGGATCACTTAACGGGGTTTCCGGGATACATGAGTGGTGGCGGTGGTGGTGGGTTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTGGAAGATGGGTGGTCTGAAATGGGAAAGTTTGATTCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAAAAAGTGACTGTGGAAGAAGATAACAGCAACAACAGCAACAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGCACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCCCCATCTTGCACCACCGCGAACTTCCCGTCGATCGTCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCATGTTGTGGATTAGAAATGGGAATCAATACCTCCGATATCGCTCTTCGAAGATCAATCAGCGCCCCTGTTTCTTTCCCAGAAAATTTCCTCGATTCATCTTGCCTCACCCAATTTCAATCCTCTTCTGGCTGGGATGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTAAAGATAGAATTGAACTGTGTAGTCAATTATCCTTCTTCTTCTTCTTCTTCTTTTTTCCTATTGAAGTACGTTTAGGTCAACATCATGACATGTCCATAAAAATAAACCAGTTTGATAAGATTGTGCATAATGATTTCATATGTTCAATTGAAGGAGGCAATATAAAGATGGAAATGTGA 1362 43.54 QDQLLQQQQQPLNQNCFNRVDYGGGFPPPVSVPADHLTGFPGYMSGGGGGGLSLVEMVMGAVKPDPGLEDGWSEMGKFDSSLLLNATAYELNSSLSRTSSCPPAVAEKMGSAAGRESFKKRKAEKVTVEEDNSNNSNKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTTANFPSIVGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDIALRRSISAPVSFPENFLDSSCLTQFQSSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGKDRIELCSQLSFFFFFFFFPIEVRLGQHHDMSIKINQFDKIVHNDFICSIEGGNIKMEM 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19468218 19471108 + Lsi11G011120.1 Lsi11g01112 674279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01112 453 Coils Coil 446 453 - -
Lsi11g01112 453 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 6 385 - -
Lsi11g01112 453 MobiDBLite consensus disorder prediction 179 212 - -
Lsi11g01112 453 Gene3D - 201 275 IPR036638 GO:0046983
Lsi11g01112 453 MobiDBLite consensus disorder prediction 95 212 - -
Lsi11g01112 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Lsi11g01112 453 MobiDBLite consensus disorder prediction 113 150 - -
Lsi11g01112 453 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 385 IPR024097 GO:0006355
Lsi11g01112 453 Pfam Helix-loop-helix DNA-binding domain 208 255 IPR011598 GO:0046983
Lsi11g01112 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 273 IPR036638 GO:0046983
Lsi11g01112 453 CDD bHLH_AtBPE_like 194 279 - -
Lsi11g01112 453 MobiDBLite consensus disorder prediction 151 178 - -
Lsi11g01112 453 SMART finulus 210 260 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01342 Lsi-Chr1:11610339 Lsi11g01112 Lsi-Chr11:19468218 3.73E-42 transposed
Lsi03g01710 Lsi-Chr3:28461856 Lsi11g01112 Lsi-Chr11:19468218 2.45E-39 transposed
Lsi05g00401 Lsi-Chr5:5076641 Lsi11g01112 Lsi-Chr11:19468218 7.29E-40 transposed
Lsi05g01353 Lsi-Chr5:21424922 Lsi11g01112 Lsi-Chr11:19468218 4.30E-49 transposed
Lsi06g01503 Lsi-Chr6:25472081 Lsi11g01112 Lsi-Chr11:19468218 5.15E-24 transposed
Lsi08g00756 Lsi-Chr8:15904120 Lsi11g01112 Lsi-Chr11:19468218 1.87E-40 transposed
Lsi09g00778 Lsi-Chr9:8827021 Lsi11g01112 Lsi-Chr11:19468218 5.75E-55 transposed
Lsi10g00371 Lsi-Chr10:5721018 Lsi11g01112 Lsi-Chr11:19468218 4.61E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26185 PF00010 HLH 1.30E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01112 - - cmo:103490373 632.869