Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01112 | CAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAACTGTTTCAATAGGGTGGATTACGGCGGCGGATTTCCGCCGCCGGTGTCTGTTCCGGCGGATCACTTAACGGGGTTTCCGGGATACATGAGTGGTGGCGGTGGTGGTGGGTTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTGGAAGATGGGTGGTCTGAAATGGGAAAGTTTGATTCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAAAAAGTGACTGTGGAAGAAGATAACAGCAACAACAGCAACAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGCACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCCCCATCTTGCACCACCGCGAACTTCCCGTCGATCGTCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCATGTTGTGGATTAGAAATGGGAATCAATACCTCCGATATCGCTCTTCGAAGATCAATCAGCGCCCCTGTTTCTTTCCCAGAAAATTTCCTCGATTCATCTTGCCTCACCCAATTTCAATCCTCTTCTGGCTGGGATGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTAAAGATAGAATTGAACTGTGTAGTCAATTATCCTTCTTCTTCTTCTTCTTCTTTTTTCCTATTGAAGTACGTTTAGGTCAACATCATGACATGTCCATAAAAATAAACCAGTTTGATAAGATTGTGCATAATGATTTCATATGTTCAATTGAAGGAGGCAATATAAAGATGGAAATGTGA | 1362 | 43.54 | QDQLLQQQQQPLNQNCFNRVDYGGGFPPPVSVPADHLTGFPGYMSGGGGGGLSLVEMVMGAVKPDPGLEDGWSEMGKFDSSLLLNATAYELNSSLSRTSSCPPAVAEKMGSAAGRESFKKRKAEKVTVEEDNSNNSNKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTTANFPSIVGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDIALRRSISAPVSFPENFLDSSCLTQFQSSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGKDRIELCSQLSFFFFFFFFPIEVRLGQHHDMSIKINQFDKIVHNDFICSIEGGNIKMEM | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19468218 | 19471108 | + | Lsi11G011120.1 | Lsi11g01112 | 674279 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01112 | 453 | Coils | Coil | 446 | 453 | - | - | |
Lsi11g01112 | 453 | PANTHER | TRANSCRIPTION FACTOR BHLH63-LIKE | 6 | 385 | - | - | |
Lsi11g01112 | 453 | MobiDBLite | consensus disorder prediction | 179 | 212 | - | - | |
Lsi11g01112 | 453 | Gene3D | - | 201 | 275 | IPR036638 | GO:0046983 | |
Lsi11g01112 | 453 | MobiDBLite | consensus disorder prediction | 95 | 212 | - | - | |
Lsi11g01112 | 453 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 204 | 254 | IPR011598 | GO:0046983 | |
Lsi11g01112 | 453 | MobiDBLite | consensus disorder prediction | 113 | 150 | - | - | |
Lsi11g01112 | 453 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 6 | 385 | IPR024097 | GO:0006355 | |
Lsi11g01112 | 453 | Pfam | Helix-loop-helix DNA-binding domain | 208 | 255 | IPR011598 | GO:0046983 | |
Lsi11g01112 | 453 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 202 | 273 | IPR036638 | GO:0046983 | |
Lsi11g01112 | 453 | CDD | bHLH_AtBPE_like | 194 | 279 | - | - | |
Lsi11g01112 | 453 | MobiDBLite | consensus disorder prediction | 151 | 178 | - | - | |
Lsi11g01112 | 453 | SMART | finulus | 210 | 260 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01342 | Lsi-Chr1:11610339 | Lsi11g01112 | Lsi-Chr11:19468218 | 3.73E-42 | transposed | |
Lsi03g01710 | Lsi-Chr3:28461856 | Lsi11g01112 | Lsi-Chr11:19468218 | 2.45E-39 | transposed | |
Lsi05g00401 | Lsi-Chr5:5076641 | Lsi11g01112 | Lsi-Chr11:19468218 | 7.29E-40 | transposed | |
Lsi05g01353 | Lsi-Chr5:21424922 | Lsi11g01112 | Lsi-Chr11:19468218 | 4.30E-49 | transposed | |
Lsi06g01503 | Lsi-Chr6:25472081 | Lsi11g01112 | Lsi-Chr11:19468218 | 5.15E-24 | transposed | |
Lsi08g00756 | Lsi-Chr8:15904120 | Lsi11g01112 | Lsi-Chr11:19468218 | 1.87E-40 | transposed | |
Lsi09g00778 | Lsi-Chr9:8827021 | Lsi11g01112 | Lsi-Chr11:19468218 | 5.75E-55 | transposed | |
Lsi10g00371 | Lsi-Chr10:5721018 | Lsi11g01112 | Lsi-Chr11:19468218 | 4.61E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26185 | PF00010 | HLH | 1.30E-06 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01112 | - | - | cmo:103490373 | 632.869 |