Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01124 ATGGGGAAGAACAAGAGACTTAAGGACGGCGGCGAGAAGGGAGCTGCCGCCGGCGACCACTGCCCTTCCAAGGTCTTTGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACTCAAAAGGGTTCAACTGAGCATCGCGGTTTTGGATTTGTGCAGTTTGCTGTAGCTGAAGATGCAAATCGAGCAATTGAGCTGAAGAATGGGCTGTCTGTTGAAGGACGCAAAATTACTGTTAAACATGCTATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCAAAAGAACATCAAGTTACTGCATCCAAGTCAACAACTAATGAGGAAGGAGATACTTCTAAAAGGGAAGAACAAACAATTAACGAGGATAGAGATACTTCTAAAAAGGAAGACCAAACATCTGACGAGGATAGAAATACTTCTAAAAAGGCGGAACAAACAACTTCAAATTCCGAGGGGAAAGAGAGACATTTGAATGCTCGGAAATTAGCTTCACTTTCTAGTTATCTAGAGGATAAAGAGGGTCATTCAGGAAAGCAAAGGATTGCAAGGACTGTTGTATTTGGTGGTCTTCTTAATGCTGATATGGCTGAAGATGTTCACCGTCAAGCAAGAAATGGTGGTGACGTATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTGAAGTCTGCACGTGCTGCTGTTACCATATTACACCAGAAAGAGATGAAAGGAGGTGTTGTATGGGCCCGGCAACTCGGTGGGGAGGGGTCCAAAACTCAGAAATGGAAAGTTATTGTTAGAAATCTTCCATTTAAGGCCAAGGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGATGTGATGATGCCACATAGTTCAGACACAGGATTATCAAAGGGGTTTGCGTTTGTCAAATTTACATGCAAGCAGGATGCTGAGAGTGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTCAAAGGACGATAGCTGTGGACTGGGCAGTTCCAAAGAAGATATATAGTTCTGGTGCTAGTGCTCCAGTTGATTCAGATGACGGGGAACAGACTGAAAGAGACAGAGAAGGTAGCATTAGTAGTGATGATTTCAAAGCTGAAAATACTGCTGTTCACAACAAATCTCAGCACTCCAACCAAGATGAAAGTTCTCCAGAGGATTCGGAGAAAGAAGATATTTCCTCAGAGGTCGATTTTGAAGGAGAAGCAGAAATTGCAAGAAAAGTTCTTGAAAATCTAATTTCATCTTCGGCTAAAGAGGCTCTTCCTTCTCTCATTGATGGTAATCCACCATCTAAAGTGAACAAGGAGCCAGATTTTGATTCATCCAAGAAGTCATCTGATATGTCTGATAAAATATCAAATGAACCTGGAAAGTTAAGTGAAAGCAAAACATCTATTCTTAAGCAAACAGATGAAGATGATTTGAAGAGAACGGTTTATATAGGCAATCTTCCTTTTGATATTGATAATGAAGAAGTGAAACAGCGATTTTCTGGATTTGGTGTAGTGCTATCCTTTGTGCCAGTCCTTCATCAAGTTACAAAGCGACCTAAAGGCACTGGTTTTCTCAAGTTTAAAACGGTCGATGCTGCTACTGCTGCTGTTTCTTCTGCAAATGTTGCATCTGGTGTGGGAATATTTCTGAAAGGCAGGCAACTGAAAGTATTGAATGCCCTGGATAGGAAATCAGCACATGACAAGGAATTGGAGAAGTCAAAAAATGACAACCATGACCACCGGAATCTTTACCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGAGTTTCTGCTAGCGATATGGAGAAACGTCAGAGGCTGGAAAAGAAAAGAACGACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAGGACTAGGCTCGTTATACACAATTTACCTAAATCAATGAAAGAAAAAGAACTTCAAAAACTTTGCATTGAAGCTGTTACCTCACGAGCTACAAAGCAAAAACCCGTGATTCGCCAGATTAAGTTCTTAAAGGATGTGAAGAAAGGAAAGATACTGACAAAAAATCACTCCTGTGGAGTTGCTTTTGTCGAGTTTTCTGAGCATGAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTAAAAATCGTCCGATCGTGGAGTTCGCTATTGACAATGTTCAAATGTTGAAGCTCCGAAAAGCAAAGTTACAAGCTAGGTCGCAGGACAATACTGCCAATGTTCCCAAAGCCCGGCAGCGAAATGCGGATAGTGATACAAATGCTGGGGATGTCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCGATAGGCGATAGTCGTCCAGTGAAGGCGCAAAACCATAACAAAGAGGAAAATGACAATCATGTATCCAATGATGTGGTGATGGAAGAAAATAGAGCTAGAAAAAAGAGGAAAACACGTCAAGAAATTGGTAATACAAACAAGTCACTTAAACAAAAACCAGAAGGAGGAACATCAATGCCTGAAAAATCGAGCAAGAGATCGGCATCCATGGATTCTGGAAAAATAGAAGTTTCCCAGGAAGCTGATGTACAACACAAAAAGAAGGCAAAATATCAAGTAGAGCAGCAGAGGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGAGGGGATATTGTCGATAAACTCGACGTGCTTATTGAACAATATCGATCCAAGTTCTCGCAGCAGAGGTCAGACCGAACAGATCGTGAAAAGAAAGGCTCTAAACAGGTTAGAAGATGGTTCCAATCATAA 2913 41.74 MGKNKRLKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQFAVAEDANRAIELKNGLSVEGRKITVKHAMHRAPLEQRRSKEHQVTASKSTTNEEGDTSKREEQTINEDRDTSKKEDQTSDEDRNTSKKAEQTTSNSEGKERHLNARKLASLSSYLEDKEGHSGKQRIARTVVFGGLLNADMAEDVHRQARNGGDVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMKGGVVWARQLGGEGSKTQKWKVIVRNLPFKAKEKEIKDTFSSAGFVWDVMMPHSSDTGLSKGFAFVKFTCKQDAESAIKKFNGQKFGQRTIAVDWAVPKKIYSSGASAPVDSDDGEQTERDREGSISSDDFKAENTAVHNKSQHSNQDESSPEDSEKEDISSEVDFEGEAEIARKVLENLISSSAKEALPSLIDGNPPSKVNKEPDFDSSKKSSDMSDKISNEPGKLSESKTSILKQTDEDDLKRTVYIGNLPFDIDNEEVKQRFSGFGVVLSFVPVLHQVTKRPKGTGFLKFKTVDAATAAVSSANVASGVGIFLKGRQLKVLNALDRKSAHDKELEKSKNDNHDHRNLYLAQEGIILEGTPAAEGVSASDMEKRQRLEKKRTTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKILTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPKNRPIVEFAIDNVQMLKLRKAKLQARSQDNTANVPKARQRNADSDTNAGDVHSNKNNSRKRKAIGDSRPVKAQNHNKEENDNHVSNDVVMEENRARKKRKTRQEIGNTNKSLKQKPEGGTSMPEKSSKRSASMDSGKIEVSQEADVQHKKKAKYQVEQQRKRPKKNKEPIGGDIVDKLDVLIEQYRSKFSQQRSDRTDREKKGSKQVRRWFQS 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19665521 19675509 + Lsi11G011240.1 Lsi11g01124 674291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01124 970 MobiDBLite consensus disorder prediction 101 115 - -
Lsi11g01124 970 PANTHER RNA BINDING PROTEIN 515 787 - -
Lsi11g01124 970 PANTHER RNA BINDING PROTEIN 7 410 - -
Lsi11g01124 970 Gene3D - 671 766 IPR012677 -
Lsi11g01124 970 SUPERFAMILY RNA-binding domain, RBD 510 605 IPR035979 GO:0003676
Lsi11g01124 970 SUPERFAMILY RNA-binding domain, RBD 663 770 IPR035979 GO:0003676
Lsi11g01124 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 520 603 IPR000504 GO:0003723
Lsi11g01124 970 MobiDBLite consensus disorder prediction 124 175 - -
Lsi11g01124 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Lsi11g01124 970 MobiDBLite consensus disorder prediction 101 175 - -
Lsi11g01124 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Lsi11g01124 970 CDD RRM4_RBM28_like 672 769 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 782 810 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 463 508 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 864 894 - -
Lsi11g01124 970 Gene3D - 282 417 IPR012677 -
Lsi11g01124 970 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 515 787 - -
Lsi11g01124 970 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 7 410 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 898 964 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 479 500 - -
Lsi11g01124 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 672 762 IPR000504 GO:0003723
Lsi11g01124 970 MobiDBLite consensus disorder prediction 811 863 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 1 20 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 1 15 - -
Lsi11g01124 970 SMART rrm1_1 24 97 IPR000504 GO:0003723
Lsi11g01124 970 SMART rrm1_1 296 369 IPR000504 GO:0003723
Lsi11g01124 970 SMART rrm1_1 673 764 IPR000504 GO:0003723
Lsi11g01124 970 SMART rrm1_1 521 599 IPR000504 GO:0003723
Lsi11g01124 970 MobiDBLite consensus disorder prediction 779 970 - -
Lsi11g01124 970 SUPERFAMILY RNA-binding domain, RBD 23 281 IPR035979 GO:0003676
Lsi11g01124 970 CDD RRM2_RBM28_like 296 372 - -
Lsi11g01124 970 SUPERFAMILY RNA-binding domain, RBD 291 385 IPR035979 GO:0003676
Lsi11g01124 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Lsi11g01124 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 94 IPR000504 GO:0003723
Lsi11g01124 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 522 582 IPR000504 GO:0003723
Lsi11g01124 970 CDD RRM1_RBM28_like 25 102 - -
Lsi11g01124 970 Coils Coil 763 783 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 388 412 - -
Lsi11g01124 970 CDD RRM3_RBM28_like 520 601 - -
Lsi11g01124 970 MobiDBLite consensus disorder prediction 379 439 - -
Lsi11g01124 970 Gene3D - 469 617 IPR012677 -
Lsi11g01124 970 Gene3D - 2 115 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01124 K14573 NOP4, RBM28; nucleolar protein 4 - csv:101217384 1601.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01124 Lsi-Chr11:19665521 Lsi03g01811 Lsi-Chr3:29539620 3.08E-08 dispersed
Lsi11g01124 Lsi-Chr11:19665521 Lsi02g00118 Lsi-Chr2:977867 1.19E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01124 Lsi_Chr11 FPKM 43.699871 46.088089 55.607517 54.054539 19.649523 27.429123 22.469488 71.303238 73.27977 62.808319