Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01125 ATGGCCAAACCCAAGGCTCCGAGACAAACCCTAGATTCTTACACTGTCAAACGCATCAACAAAACCATTAAAGCCGGCGATTGCGTGCTTATGAGGCCCTCCGAACCCTCGAAGCCGTCGTATGTTGCTAAGATTGAGAAGATTGAGGCTGATTCTCGTGGGGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCAATTGGCGGTCGTAGACAGTTTCATGGCTCGAAGGAGTTGTTTCTCTCCGACCATTATGACGTTCAAAGCGCCGACACCATCGAGGGCAAGTGTACGGTGCATACGTTTAAGAATTATACCAAGCTTGATGCCGTTGGAAATGATGATTATTTTTGCCGTTTCGACTATAATTCCACTACTGGAGCTTTCAATCCCGATCGAGTGGCTGTGTATTGCAAGTGTGAGATGCCTTATAATCCCGACGACCTAATGGTTCAATGTGAGAGCTGCAGTGATTGGTTTCATCCTGCTTGTATTGAAATGACTGCAGAAGAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGTTGTTCTTCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGTCTACATCTAAAGTTGCAGAGACAAAGGCATTTCTTCCTCATTTGGTTGGTACTGTAGGTGGATACAAAACGACGCCGGAGGTGACGATAGTGTAA 693 45.89 MAKPKAPRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNDDYFCRFDYNSTTGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIEMTAEEAKKLDHFFCESCSSEGQKKLQNSQSTSKVAETKAFLPHLVGTVGGYKTTPEVTIV 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19679215 19684307 + Lsi11G011250.1 Lsi11g01125 674292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01125 230 Gene3D - 2 135 IPR043151 -
Lsi11g01125 230 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 209 IPR045205 GO:0006325|GO:0035064
Lsi11g01125 230 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lsi11g01125 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Lsi11g01125 230 Pfam PHD-finger 141 189 IPR019787 -
Lsi11g01125 230 SMART BAH_4 21 137 IPR001025 GO:0003682
Lsi11g01125 230 PANTHER OS08G0421900 PROTEIN 1 209 - -
Lsi11g01125 230 SMART PHD_3 141 188 IPR001965 -
Lsi11g01125 230 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lsi11g01125 230 SUPERFAMILY FYVE/PHD zinc finger 131 193 IPR011011 -
Lsi11g01125 230 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lsi11g01125 230 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01125 - - - csv:101211114 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01125 Lsi-Chr11:19679215 Lsi11g01424 Lsi-Chr11:22809056 4.15E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000538 4 7 4 5 4 2 5 3 2 2 2 2 4 3 2 4 2 4 5 2 2 3 3 3 3 3 3 10 9 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26186 PF01426 BAH 4.30E-23 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01125 Lsi_Chr11 FPKM 0.532385 0.636808 0.531797 0.514422 1.86519 1.960328 1.582047 1.008724 0.802617 0.730452