Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01126 ATGGGAATATGCCGCAATGGGTCTATCGAGTTTCTCAAATGTGAACTCTCAGTAATCGGATCAAGCGCTCTGAGAGTGGACTTCGATGGAAGGAGCGGATTCAAGTTTCTGAGGGGAGAGTTGTTGGAGATTGGTATTTCAATTTCCGTATTTTCAGATTTAGATTTGGGAATCGCCATTCGAATAGTGGTGAAGATGAGTGTTGTGGGGTTTTCTTGTTCTTGTTCTTTTGTTGTGCTTATTGCTGTTTTGGTTATGGTTTTGAATGGAGTGGAGGTGTGTTATGGAGTTAAAACAAGCCAGTTTCTGAGGAAGGTTGAGAAAACTGTGGATATGCCTCTTGACAGTGATGTTTTTGCTGTTCCTCCTGGTTATAATGCTCCCCAGCAGGTTCATATCACACAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGGTCACTCCAAATAAACCAGGATCAAATAAAGTATTTTATTGGACTGAGAAAAGCAGGCAAAAGAAACAGGCCTTTGGAAAAGTATATACTTACAAGTTCTATAATTACACTTCTGGCTACATTCATCACTGCACCATTGAAAACTTAAAGTACAACACCAAATACTATTATGAAGTGGGAATTGAGTACTCTCCAAGAACATTCTGGTTCGTCACTCCTCCAGAAGTCGGTCCCGATGTCCCCTATACATTTGGTCTCATAGGGGACCTTGGTCAGAGTTTTGATTCAAATATAACGCTTACACATTACGAACGAAACCCGCATAAAGGAAAGACAGTGTTGTTTGTAGGGGATCTATCTTATGCTGACAACTATCCATTCCATGACAATGTAAGGTGGGATACATGGGGAAGATTTACTGAGAGAAGCATCGCCTATCAGCCTTGGATATGGACTGCAGGAAATCATGAAATTGATTTTGTCCCAGAAATTGGCGAGACCGAGCCTTTCAAGCCGTTTACTAACCGATATCATGTCCCTTACAAAGCATCCGAGAGCACAGCTCCTTTTTGGTACTCAATCAAGAGAGGTCCAGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAGTACAAATGGCTTGAAGCGGAGCTACCAAAAGTTAACAGAAGTGAAACACCATGGTTGATTGTTCTTATGCATTCCCCATGGTACAACAGCTACAACTATCATTACATGGAAGGGGAAACTATGCGAGTGATGTATGAGCCATGGTTTGTACAATACAAAGTCGACGTCGTCTTTGCTGGCCATGTACATGCTTACGAAAGATCTGAAAGAATTTCAAATATTGCATACAACATTGTGAATGGCCACTGTATTCCAATTAAAGATCAATCTGCACCTGTTTACATAACAATAGGTGATGGAGGAAACCTTGAAGGCCTAGCAACCAATATGACGGAGCCACAGCCTGCGTACTCGGCATATCGTGAAGCAAGTTTTGGCCACGGCATATTCGATATAAAGAACAGAACTCATGCATTTTTCAGTTGGAACAGGAATCAAGATGGATATGCAGTTGAAGCTGATACTCTTTGGTTCTTCAACCGACACTGGTACCCGGTCGACGAGTCGTTAAGTGAGCAGAAATGA 1614 41.82 MGICRNGSIEFLKCELSVIGSSALRVDFDGRSGFKFLRGELLEIGISISVFSDLDLGIAIRIVVKMSVVGFSCSCSFVVLIAVLVMVLNGVEVCYGVKTSQFLRKVEKTVDMPLDSDVFAVPPGYNAPQQVHITQGDHEGKAVIVSWVTPNKPGSNKVFYWTEKSRQKKQAFGKVYTYKFYNYTSGYIHHCTIENLKYNTKYYYEVGIEYSPRTFWFVTPPEVGPDVPYTFGLIGDLGQSFDSNITLTHYERNPHKGKTVLFVGDLSYADNYPFHDNVRWDTWGRFTERSIAYQPWIWTAGNHEIDFVPEIGETEPFKPFTNRYHVPYKASESTAPFWYSIKRGPAYIIVLASYSAYGKYTPQYKWLEAELPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERISNIAYNIVNGHCIPIKDQSAPVYITIGDGGNLEGLATNMTEPQPAYSAYREASFGHGIFDIKNRTHAFFSWNRNQDGYAVEADTLWFFNRHWYPVDESLSEQK 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19691751 19695535 - Lsi11G011260.1 Lsi11g01126 674293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01126 537 PANTHER ACID PHOSPHATASE RELATED 74 535 IPR039331 GO:0003993
Lsi11g01126 537 Pfam Purple acid Phosphatase, N-terminal domain 128 210 IPR015914 GO:0003993|GO:0046872
Lsi11g01126 537 Pfam Iron/zinc purple acid phosphatase-like protein C 454 513 IPR025733 -
Lsi11g01126 537 PANTHER PURPLE ACID PHOSPHATASE 74 535 - -
Lsi11g01126 537 Gene3D - 127 223 - -
Lsi11g01126 537 SUPERFAMILY Metallo-dependent phosphatases 225 531 IPR029052 -
Lsi11g01126 537 ProSiteProfiles Fibronectin type-III domain profile. 127 222 IPR003961 GO:0005515
Lsi11g01126 537 Pfam Calcineurin-like phosphoesterase 230 428 IPR004843 GO:0016787
Lsi11g01126 537 Gene3D - 224 533 IPR029052 -
Lsi11g01126 537 CDD MPP_PAPs 225 523 IPR041792 -
Lsi11g01126 537 SUPERFAMILY Purple acid phosphatase, N-terminal domain 109 221 IPR008963 GO:0003993|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01126 K22390 ACP7; acid phosphatase type 7 - csv:101211612 964.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00633 Lsi-Chr1:5101431 Lsi11g01126 Lsi-Chr11:19691751 0 dispersed
Lsi09g01137 Lsi-Chr9:18260425 Lsi11g01126 Lsi-Chr11:19691751 7.59E-75 dispersed
Lsi09g01138 Lsi-Chr9:18274317 Lsi11g01126 Lsi-Chr11:19691751 2.45E-69 dispersed
Lsi01g01228 Lsi-Chr1:10486092 Lsi11g01126 Lsi-Chr11:19691751 2.48E-67 transposed
Lsi02g01737 Lsi-Chr2:23086852 Lsi11g01126 Lsi-Chr11:19691751 5.11E-16 transposed
Lsi04g01205 Lsi-Chr4:18607207 Lsi11g01126 Lsi-Chr11:19691751 4.72E-84 transposed
Lsi05g01814 Lsi-Chr5:25393825 Lsi11g01126 Lsi-Chr11:19691751 1.32E-54 transposed
Lsi06g01015 Lsi-Chr6:20289060 Lsi11g01126 Lsi-Chr11:19691751 5.93E-162 transposed
Lsi11g01126 Lsi-Chr11:19691751 Lsi08g01356 Lsi-Chr8:21887221 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g11 . . . . . . . . . . . . . . . Cpe04g00114 . . . . . . . . Cla02g00499 Cam02g0509 Cec02g0509 Cco02g0515 Clacu02g0511 Cmu02g0507 Cre02g0840 . . . . . . . Cme01g01364 Blo04g00527 . . Bda14g00570 . . Bma03g00564 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01126 . Chy01g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01126 Lsi_Chr11 FPKM 35.28167 36.331696 18.955677 20.015617 10.519712 9.365331 10.036393 44.359383 42.688919 42.420975