Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01128 | ATGGGCGATACCCGTGGTGGTTGCTGTCCATCCATGGATCTCTTCCGCTCCGAGCCGATGCAGCTGGTGCAGCTCATCATTCCCATCGAGTCTGCGCATCGCACCATCTCCTACCTCGGTGATCTCGGTCTTCTCCAGTTCAAAGATCTCAATGCCGATAAAAGCCCATTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAGATGTTGAAGGCGGGTTTGTCAAGCAAAAGCTCCGTGTCACAAGTTGATATCAATATAGACGATCTTGAGATCAAACTTGGTGAGCTTGAGGCAGAACTGGTTGAGATAAATGCTAATAGTGAGAAGCTACAACGTTCCTACAATGAACTTGTGGAGTATAAACTTGTTCTGCAGAAGGCCGGAGAGTTTTTCAGTGCAGCGCAAAGCAGTGCCGTAGAGCAGCAAAGGGAGTTTGAATCACGAAGAATTGGTGGAGATTCAATAGAAGTTCCATTGTTGTTGGAACAAGAATCATCTGTGGATCAGTCAAAGCCAGTTAATTTGGGATTTCTTTCTGGTCTTGTTCCTCGGGAAAAATCTATGGCATTTGAGAGGATACTTTTTCGTGCTACCAGGGGCAATGTATTTCTGAAGCAGGCTGCAGTTGAGGATCCTGTTGCAGATCCTGTTTCTGGAGAGAAGGTTGAGAAAAACGTGTTTATTGTTTTCTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGGCATTTGGTGCAAATCGATACCCTTTTACTGAGGACTTGGGGAAACAAGCCCAAATGATTGCCGAGGTTTCTGGAAAACTGTCCGAGCTGAAGACTACAATAGATGTAGGGCTGCTGCACCGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAAATTGGAATCTCCTGGCGAGGAAGGAAAAGTCTATATACCATATCTTGAACATGCTTAGCCTTGATGTAACAAAAAAATGTCTGGTCGCTGAGGGATTCAAGATGCACTCCAGCGAGCAGCATCCGATTCCAACTCCCAGGGTGGCAAAGTATCAAGAAGCAAATCCTGGTGTATACACCATTGTCACATTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATATAATGATATCGAGGACTCTGATGATGATAGTATGGAAACAATTACTCTTGGGGACAAAAGAATAGGAATCAAGACTAGCGTTCTTGAGGAAAAAGCTACAGCTTGTAACATGTTGTGTTGCTATGCCGATGAGTTGAAGGAAGGATTTTTTCCATGGATTGATCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTATTTTCAATATACACAGGTCTGATCTATAATGAGTTCTTTTCAGTCCCATTTGGACTGTTTGGTCCCTCAGCCTATGCATGTCGTAGTACTGATTGCAGTGATTCCACCACTATGGGGTTGATAAAGGTGGGTTCTACGTATCCATTTGGCTTGGATCCTGTATGGCATGGCACTCGAAGTGAGCTTCCATTTCTTAACTCTCTGAAGATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTCAGGAACAGCATTAATATCTGGTTCCAATTCCTGCCACAGATGATATTCCTGAACAGCCTTTTTGGCTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACTGGTTCAAATGCTGATCTGTACCACGTAATGATATACATGTTTCTGGGCCCTACCGAGGATCTGGCTGAAAATCAACTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTACTCTTACTGGCCCTAGTTGCTGTGCCATGGATGCTGCTTCCGAAGCCTTTTCTTTTGAAGAGACAGCACGAACAGAGGTTCCAAGGCCAATCTTATGTGCCCCTTCCAAGTGCTGATGATTCCCTCGAGGTGGATTCACATCATGATTCGCATGGTCATGAGGAGTTCGAGTTCAGTGAGGTTTTTGTTCATCAACTTATACATACCATCGAATTTGTGCTTGGAGCAGTGTCAAATACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCGCACTCAGAGTTGTCAAGCGTGTTTTATGACAAGGTTCTCGTTCTATCTGCGGGGCATTATCGTTTTCATTTTCGCTACCGTTGGCGTGTTGCTATTGATGGAGACTTTAAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTCGAGTTTCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCATCCTTTCTCATTTGCATTGCTAGATGA | 2394 | 43.44 | MGDTRGGCCPSMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNADKSPFQRTYAAQIKRCGEMARKLNFFKEQMLKAGLSSKSSVSQVDINIDDLEIKLGELEAELVEINANSEKLQRSYNELVEYKLVLQKAGEFFSAAQSSAVEQQREFESRRIGGDSIEVPLLLEQESSVDQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVFLKQAAVEDPVADPVSGEKVEKNVFIVFYSGERAKNKILKICEAFGANRYPFTEDLGKQAQMIAEVSGKLSELKTTIDVGLLHRGNLLQTIGEHFENWNLLARKEKSIYHILNMLSLDVTKKCLVAEGFKMHSSEQHPIPTPRVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGIYNDIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGPSAYACRSTDCSDSTTMGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLGPTEDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKRQHEQRFQGQSYVPLPSADDSLEVDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGHYRFHFRYRWRVAIDGDFKCLPSCTASSLGRVSKQVLRGRRVQIPSFLICIAR | 797 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19704107 | 19719537 | - | Lsi11G011280.1 | Lsi11g01128 | 674295 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01128 | 797 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT A | 6 | 346 | - | - | |
Lsi11g01128 | 797 | PIRSF | ATP6V0A1 | 438 | 753 | IPR026028 | GO:0000220|GO:0046961 | |
Lsi11g01128 | 797 | PIRSF | ATP6V0A1 | 10 | 355 | IPR026028 | GO:0000220|GO:0046961 | |
Lsi11g01128 | 797 | PIRSF | ATP6V0A1 | 346 | 392 | IPR026028 | GO:0000220|GO:0046961 | |
Lsi11g01128 | 797 | Coils | Coil | 93 | 127 | - | - | |
Lsi11g01128 | 797 | Gene3D | - | 403 | 457 | IPR011989 | - | |
Lsi11g01128 | 797 | Pfam | V-type ATPase 116kDa subunit family | 447 | 741 | IPR002490 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi11g01128 | 797 | Pfam | V-type ATPase 116kDa subunit family | 359 | 391 | IPR002490 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi11g01128 | 797 | Pfam | V-type ATPase 116kDa subunit family | 38 | 350 | IPR002490 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi11g01128 | 797 | PANTHER | VACUOLAR PROTON ATPASES | 347 | 391 | IPR002490 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi11g01128 | 797 | PANTHER | VACUOLAR PROTON ATPASES | 446 | 745 | IPR002490 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi11g01128 | 797 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT A | 347 | 391 | - | - | |
Lsi11g01128 | 797 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT A | 446 | 745 | - | - | |
Lsi11g01128 | 797 | PANTHER | VACUOLAR PROTON ATPASES | 6 | 346 | IPR002490 | GO:0033179|GO:0046961|GO:1902600 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g01308 | Lsi-Chr10:17275742 | Lsi11g01128 | Lsi-Chr11:19704107 | 0 | dispersed | |
Lsi01g01674 | Lsi-Chr1:15285581 | Lsi11g01128 | Lsi-Chr11:19704107 | 1.31E-23 | transposed | |
Lsi10g00925 | Lsi-Chr10:13712587 | Lsi11g01128 | Lsi-Chr11:19704107 | 5.80E-29 | transposed | |
Lsi11g01128 | Lsi-Chr11:19704107 | Lsi08g01352 | Lsi-Chr8:21826402 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01128 | K02154 | - | csv:101211364 | 1234.94 |