Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01128 ATGGGCGATACCCGTGGTGGTTGCTGTCCATCCATGGATCTCTTCCGCTCCGAGCCGATGCAGCTGGTGCAGCTCATCATTCCCATCGAGTCTGCGCATCGCACCATCTCCTACCTCGGTGATCTCGGTCTTCTCCAGTTCAAAGATCTCAATGCCGATAAAAGCCCATTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAGATGTTGAAGGCGGGTTTGTCAAGCAAAAGCTCCGTGTCACAAGTTGATATCAATATAGACGATCTTGAGATCAAACTTGGTGAGCTTGAGGCAGAACTGGTTGAGATAAATGCTAATAGTGAGAAGCTACAACGTTCCTACAATGAACTTGTGGAGTATAAACTTGTTCTGCAGAAGGCCGGAGAGTTTTTCAGTGCAGCGCAAAGCAGTGCCGTAGAGCAGCAAAGGGAGTTTGAATCACGAAGAATTGGTGGAGATTCAATAGAAGTTCCATTGTTGTTGGAACAAGAATCATCTGTGGATCAGTCAAAGCCAGTTAATTTGGGATTTCTTTCTGGTCTTGTTCCTCGGGAAAAATCTATGGCATTTGAGAGGATACTTTTTCGTGCTACCAGGGGCAATGTATTTCTGAAGCAGGCTGCAGTTGAGGATCCTGTTGCAGATCCTGTTTCTGGAGAGAAGGTTGAGAAAAACGTGTTTATTGTTTTCTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGGCATTTGGTGCAAATCGATACCCTTTTACTGAGGACTTGGGGAAACAAGCCCAAATGATTGCCGAGGTTTCTGGAAAACTGTCCGAGCTGAAGACTACAATAGATGTAGGGCTGCTGCACCGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAAATTGGAATCTCCTGGCGAGGAAGGAAAAGTCTATATACCATATCTTGAACATGCTTAGCCTTGATGTAACAAAAAAATGTCTGGTCGCTGAGGGATTCAAGATGCACTCCAGCGAGCAGCATCCGATTCCAACTCCCAGGGTGGCAAAGTATCAAGAAGCAAATCCTGGTGTATACACCATTGTCACATTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATATAATGATATCGAGGACTCTGATGATGATAGTATGGAAACAATTACTCTTGGGGACAAAAGAATAGGAATCAAGACTAGCGTTCTTGAGGAAAAAGCTACAGCTTGTAACATGTTGTGTTGCTATGCCGATGAGTTGAAGGAAGGATTTTTTCCATGGATTGATCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTATTTTCAATATACACAGGTCTGATCTATAATGAGTTCTTTTCAGTCCCATTTGGACTGTTTGGTCCCTCAGCCTATGCATGTCGTAGTACTGATTGCAGTGATTCCACCACTATGGGGTTGATAAAGGTGGGTTCTACGTATCCATTTGGCTTGGATCCTGTATGGCATGGCACTCGAAGTGAGCTTCCATTTCTTAACTCTCTGAAGATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTCAGGAACAGCATTAATATCTGGTTCCAATTCCTGCCACAGATGATATTCCTGAACAGCCTTTTTGGCTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACTGGTTCAAATGCTGATCTGTACCACGTAATGATATACATGTTTCTGGGCCCTACCGAGGATCTGGCTGAAAATCAACTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTACTCTTACTGGCCCTAGTTGCTGTGCCATGGATGCTGCTTCCGAAGCCTTTTCTTTTGAAGAGACAGCACGAACAGAGGTTCCAAGGCCAATCTTATGTGCCCCTTCCAAGTGCTGATGATTCCCTCGAGGTGGATTCACATCATGATTCGCATGGTCATGAGGAGTTCGAGTTCAGTGAGGTTTTTGTTCATCAACTTATACATACCATCGAATTTGTGCTTGGAGCAGTGTCAAATACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCGCACTCAGAGTTGTCAAGCGTGTTTTATGACAAGGTTCTCGTTCTATCTGCGGGGCATTATCGTTTTCATTTTCGCTACCGTTGGCGTGTTGCTATTGATGGAGACTTTAAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTCGAGTTTCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCATCCTTTCTCATTTGCATTGCTAGATGA 2394 43.44 MGDTRGGCCPSMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNADKSPFQRTYAAQIKRCGEMARKLNFFKEQMLKAGLSSKSSVSQVDINIDDLEIKLGELEAELVEINANSEKLQRSYNELVEYKLVLQKAGEFFSAAQSSAVEQQREFESRRIGGDSIEVPLLLEQESSVDQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVFLKQAAVEDPVADPVSGEKVEKNVFIVFYSGERAKNKILKICEAFGANRYPFTEDLGKQAQMIAEVSGKLSELKTTIDVGLLHRGNLLQTIGEHFENWNLLARKEKSIYHILNMLSLDVTKKCLVAEGFKMHSSEQHPIPTPRVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGIYNDIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGPSAYACRSTDCSDSTTMGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLGPTEDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKRQHEQRFQGQSYVPLPSADDSLEVDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGHYRFHFRYRWRVAIDGDFKCLPSCTASSLGRVSKQVLRGRRVQIPSFLICIAR 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19704107 19719537 - Lsi11G011280.1 Lsi11g01128 674295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01128 797 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 6 346 - -
Lsi11g01128 797 PIRSF ATP6V0A1 438 753 IPR026028 GO:0000220|GO:0046961
Lsi11g01128 797 PIRSF ATP6V0A1 10 355 IPR026028 GO:0000220|GO:0046961
Lsi11g01128 797 PIRSF ATP6V0A1 346 392 IPR026028 GO:0000220|GO:0046961
Lsi11g01128 797 Coils Coil 93 127 - -
Lsi11g01128 797 Gene3D - 403 457 IPR011989 -
Lsi11g01128 797 Pfam V-type ATPase 116kDa subunit family 447 741 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi11g01128 797 Pfam V-type ATPase 116kDa subunit family 359 391 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi11g01128 797 Pfam V-type ATPase 116kDa subunit family 38 350 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi11g01128 797 PANTHER VACUOLAR PROTON ATPASES 347 391 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi11g01128 797 PANTHER VACUOLAR PROTON ATPASES 446 745 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi11g01128 797 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 347 391 - -
Lsi11g01128 797 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 446 745 - -
Lsi11g01128 797 PANTHER VACUOLAR PROTON ATPASES 6 346 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01308 Lsi-Chr10:17275742 Lsi11g01128 Lsi-Chr11:19704107 0 dispersed
Lsi01g01674 Lsi-Chr1:15285581 Lsi11g01128 Lsi-Chr11:19704107 1.31E-23 transposed
Lsi10g00925 Lsi-Chr10:13712587 Lsi11g01128 Lsi-Chr11:19704107 5.80E-29 transposed
Lsi11g01128 Lsi-Chr11:19704107 Lsi08g01352 Lsi-Chr8:21826402 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01128 K02154 - csv:101211364 1234.94