Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01129 ATGGCGTCCGATTCTTCTCCAGTTAACTTCAATACAGGTCCTTCGTCGCCTGATGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCCTCCTCAGGGGACGGTTACCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATTGCTACGCCGCCGCGTCAACGATCCCGAATGGTCTCGTCGGAAACCACCCCGGCGGCAAAGGAGCCGCGCTCGCTCCGGCGAGGCGGTGGGCGAAGAGCGTCGGGTAGTGAAGCGCCTCCAGTGGCTGCTACACCTTCTTCGACAGATGATATTCCGCCATCGACGGAACCTGGCGACGGCGACGACATGGATGAGGACCATCCGACCTTTGTATGGGGGACGAATATCAGTGTTGATGATGTAAAGGGGGCTATTATTCGGTTTTTAAGGCATTTCCGTGAGCGTCAGGCGTCGCAGTCTGAAGGCGATTTTCATACTGAGGGGAAATACGCGGAGGTAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATTTGTTCAATTACGATACGGATTTATACACGAAGATGGTGAGGTACCCTCTCGAGGTTCTCGCTATTTTTGATATCGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAGCACATTCAAACTCGGATATTCAATCTCAAAACTTCTACTTCAATGAGAAATCTTAACCCATCTGGTAATGTTTCATTGTTTCCAACATTCAATTTCATTGTTTTAGTTTTTGATAGTTGTCTCCAGTCCTTTCAATTACTGAAGACTAATAACAATTGGTTTTTTTTATTAGACATTGAGAGGATGGTATCACTGAAGGGAATGATTATAAGGTGTAGTTCAATAATTCCTGAGATCAGGGAGGCGATATTTAGATGTCTCGTATGTGGATACTACACTGACCCCGTATCTATCGAGAGAGGACGAATAACTGAGCCTACTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAACTCCATGGCATTGGTTCACAATCGATGCAGGTTTGCTGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACGCCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGACCAACCCAGAGAACTGTAAAATCATTGTTCAAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGATAAGTCAAGAATGGTGGCAGAAGACCTAACTGATGCTGAGAACCGGTTGGGTGGAAATGTGGATGATCTCCAATTTGATGAAGCGAAGGTGGAAGAATTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTGACCAGGTCATTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGTCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTCACCAAAGATCCTGAAACAGGCGAAACAGTACTAGAGAGTGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAGCAACAAACTGTTTCAATAGCAAAGGCTGGAATTATTGCTTCCCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGCCTATCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTGTCAAGGTTTGACTTGATTTATCTAATCCTAGATAAAGCTGACGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTTTCACTGCACTTTGACAACCCAGAGTGTCTTGTTCATCATCCAGTTGCATTCTTCAACTTGCAGGGCATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAACATTCACCCAAAATTGTCAGACGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTCAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTACATTTATTCAAACACATTCGAATGCGAGGAAATCTGATCATTGTTGCTGAAACTATAACTCCCGTTGTAGTGATGGGGAGAGAGGGAGAGACGGGTTTCTACTTTTCTGTCATCACAGCTACCCCCAGACAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTCGAAAAGGGCGACGTTCTTGAATCATTCCGGCTTCTAGAAGTTGCAATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATCTGATCACCACGGGAGTATCAGCCAGTGAAAGGATGCGAAGGGAGAGTTTATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTTGGAGGACCCTCCATGCGCCTGGCAGAGTTGCTGGATGAGCTGAAGAAGAAGAATCCTGATAATGAAGTCCATCTCAACAACCTTAGAAATGCGGTATCAACACTTGCAAGTGAGGGATTTGTAACAATCCATGGTGATAGCATAAAGAGAATATGA 2796 45.24 MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEIATPPRQRSRMVSSETTPAAKEPRSLRRGGGRRASGSEAPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRERQASQSEGDFHTEGKYAEVIKRVLEIEGDSLDVDAQDLFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTSMRNLNPSGNVSLFPTFNFIVLVFDSCLQSFQLLKTNNNWFFLLDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVSIERGRITEPTICLKEECQARNSMALVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMVAEDLTDAENRLGGNVDDLQFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPECLVHHPVAFFNLQGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVHLFKHIRMRGNLIIVAETITPVVVMGREGETGFYFSVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLSATRNIIMEKMQLGGPSMRLAELLDELKKKNPDNEVHLNNLRNAVSTLASEGFVTIHGDSIKRI 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19722511 19727950 - Lsi11G011290.1 Lsi11g01129 674296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01129 931 SUPERFAMILY Nucleic acid-binding proteins 279 422 IPR012340 -
Lsi11g01129 931 MobiDBLite consensus disorder prediction 1 121 - -
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 527 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 624 636 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 600 613 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 572 586 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 651 659 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 CDD MCM4 474 833 - -
Lsi11g01129 931 MobiDBLite consensus disorder prediction 46 69 - -
Lsi11g01129 931 Pfam MCM AAA-lid domain 710 833 IPR041562 -
Lsi11g01129 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 92 242 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 ProSitePatterns MCM family signature. 580 588 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lsi11g01129 931 ProSiteProfiles MCM family domain profile. 471 677 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 SMART mcm 278 835 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 Gene3D - 125 230 - -
Lsi11g01129 931 Gene3D - 279 411 IPR012340 -
Lsi11g01129 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 279 930 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 Gene3D - 449 839 IPR027417 -
Lsi11g01129 931 Pfam MCM P-loop domain 459 681 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 294 307 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 835 844 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 345 357 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 487 498 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 633 650 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 Pfam MCM N-terminal domain 134 226 IPR027925 -
Lsi11g01129 931 SUPERFAMILY Nucleic acid-binding proteins 152 242 IPR012340 -
Lsi11g01129 931 Pfam MCM OB domain 279 401 IPR033762 -
Lsi11g01129 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 279 930 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 Gene3D - 299 351 - -
Lsi11g01129 931 Gene3D - 840 922 IPR036388 -
Lsi11g01129 931 MobiDBLite consensus disorder prediction 1 34 - -
Lsi11g01129 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 92 242 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 847 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01129 K02212 MCM4, CDC54; DNA replication licensing factor MCM4 [EC:5.6.2.3] - csv:101211850 1522.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02475 Lsi-Chr2:31241043 Lsi11g01129 Lsi-Chr11:19722511 1.08E-106 dispersed
Lsi03g02053 Lsi-Chr3:31857777 Lsi11g01129 Lsi-Chr11:19722511 9.19E-78 dispersed
Lsi11g01129 Lsi-Chr11:19722511 Lsi11g00378 Lsi-Chr11:3882467 4.18E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g15 . . . . . . . . Cmo19g00696 . . . . . . Cpe04g00111 Cpe15g00556 . . . . . . . Cla02g00495 Cam02g0506 Cec02g0506 Cco02g0511 Clacu02g0508 Cmu02g0504 Cre02g0837 . . Cone3ag1220 . . Csa07g00021 . Cme01g01361 . . . . . . . . . . . . Cma19g00684 . Car19g00528 . . . . . . . . . . . . . . . . Lsi11g01129 . Chy01g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G14700 52.6 2.6e-76 283.9
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G14700 68.1 5.7e-55 213.0
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G12620 55.3 1.1e-82 305.1
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G12620 69.5 6.8e-56 216.1
Lsi08g01455 . 2 372 Core DNA Replication Machinery Family AT2G37560 63.6 2.3e-138 488.8
Lsi04g01057 . 6 378 Core DNA Replication Machinery Family AT2G01120 63.4 1.4e-134 476.5
Lsi09g01574 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 8.6e-175 610.5
Lsi11g00986 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.4 1.7e-94 342.8
Lsi11g01609 . 80 903 Core DNA Replication Machinery Family AT1G79150 54.4 4.0e-229 791.6
Lsi03g01268 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.7 0.0e+00 1352.8
Lsi01g00160 . 107 687 Core DNA Replication Machinery Family AT5G46280 78.6 4.3e-259 890.6
Lsi11g01129 . 1 931 Core DNA Replication Machinery Family AT2G16440 69.3 0.0e+00 1105.9
Lsi11g00378 . 1087 1862 Core DNA Replication Machinery Family AT2G07690 73.6 0.0e+00 1080.9
Lsi01g00004 . 7 923 Core DNA Replication Machinery Family AT5G44635 61.5 2.1e-310 1061.6
Lsi02g02475 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.0
Lsi10g01424 . 36 481 Core DNA Replication Machinery Family AT2G29680 50.6 7.8e-127 451.1
Lsi10g01424 . 37 483 Core DNA Replication Machinery Family AT1G07270 52.1 1.7e-120 429.9
Lsi02g02100 . 758 1350 Core DNA Replication Machinery Family AT3G25100 76.4 2.5e-257 884.8
Lsi03g02053 . 26 672 Core DNA Replication Machinery Family AT3G09660 66.3 2.9e-237 818.5
Lsi03g02054 . 12 181 Core DNA Replication Machinery Family AT3G09660 81.2 6.6e-72 269.2
Lsi03g00736 . 22 377 Core DNA Replication Machinery Family AT2G14050 67.4 9.9e-151 530.8
Lsi03g00738 . 16 198 Core DNA Replication Machinery Family AT2G14050 53.0 2.5e-45 180.6
Lsi10g00493 . 1890 2300 Core DNA Replication Machinery Family AT2G20980 55.5 8.0e-119 424.1
Lsi02g02726 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.3 9.5e-76 280.0
Lsi03g00967 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 4.9e-61 230.7
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Lsi05g02052 . 6 171 Core DNA Replication Machinery Family AT5G49010 57.2 1.3e-45 179.9
Lsi10g00533 . 1 1707 Core DNA Replication Machinery Family AT5G67100 52.7 0.0e+00 1597.8
Lsi02g00133 . 2 572 Core DNA Replication Machinery Family AT1G67630 53.8 5.1e-181 631.3
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi08g00158 . 10 382 Core DNA Replication Machinery Family AT5G41880 58.0 2.9e-125 445.7
Lsi08g00157 . 57 255 Core DNA Replication Machinery Family AT5G41880 60.4 1.1e-76 284.3
Lsi01g01175 . 1 968 Core DNA Replication Machinery Family AT5G63960 69.8 0.0e+00 1424.5
Lsi03g01734 . 1 550 Core DNA Replication Machinery Family AT2G42120 57.6 1.9e-177 619.0
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi10g01177 . 1 1996 Core DNA Replication Machinery Family AT1G08260 64.8 0.0e+00 2626.3
Lsi02g01714 . 8 1499 Core DNA Replication Machinery Family AT1G08260 65.4 0.0e+00 1877.4
Lsi02g01713 . 15 187 Core DNA Replication Machinery Family AT1G08260 55.6 1.1e-44 180.3
Lsi10g01177 . 25 2103 Core DNA Replication Machinery Family AT2G27120 62.0 0.0e+00 2599.7
Lsi02g01714 . 31 1499 Core DNA Replication Machinery Family AT2G27120 63.2 0.0e+00 1778.5
Lsi02g01713 . 24 187 Core DNA Replication Machinery Family AT2G27120 53.9 5.6e-41 167.9
Lsi02g00021 . 74 324 Core DNA Replication Machinery Family AT5G22110 78.1 5.8e-119 424.9
Lsi02g00022 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.2 2.6e-58 223.4
Lsi10g01127 . 71 1019 Core DNA Replication Machinery Family AT5G22010 59.9 1.9e-285 978.8
Lsi07g01383 . 54 433 Core DNA Replication Machinery Family AT1G63160 70.3 3.4e-139 491.5
Lsi01g01707 . 1 357 Core DNA Replication Machinery Family AT5G27740 79.3 1.3e-165 579.3
Lsi04g02414 . 36 285 Core DNA Replication Machinery Family AT1G21690 62.5 1.1e-97 353.6
Lsi08g00447 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.6 1.5e-156 549.3
Lsi11g00167 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-253 871.7
Lsi07g01137 . 32 704 Core DNA Replication Machinery Family AT2G06510 51.0 1.2e-198 689.9
Lsi06g01410 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 2.7e-251 864.8
Lsi07g01137 . 10 813 Core DNA Replication Machinery Family AT5G45400 52.5 4.0e-232 801.6
Lsi06g01410 . 1 618 Core DNA Replication Machinery Family AT5G61000 67.4 2.7e-246 848.2
Lsi07g01137 . 5 799 Core DNA Replication Machinery Family AT4G19130 54.8 1.1e-228 790.0
Lsi06g00020 . 1 385 Core DNA Replication Machinery Family AT5G26680 78.8 2.2e-175 612.1
Lsi07g00045 . 42 374 Core DNA Replication Machinery Family AT2G25100 59.5 7.1e-106 380.6
Lsi10g01227 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.2 3.8e-298 1020.8
Lsi10g01227 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.6 5.9e-244 840.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007588 1 2 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01129 Lsi_Chr11 FPKM 28.364273 26.158463 27.4779 30.159048 27.641596 29.900658 34.034382 21.390038 25.36945 27.18124