Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01129 ATGGCGTCCGATTCTTCTCCAGTTAACTTCAATACAGGTCCTTCGTCGCCTGATGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCCTCCTCAGGGGACGGTTACCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATTGCTACGCCGCCGCGTCAACGATCCCGAATGGTCTCGTCGGAAACCACCCCGGCGGCAAAGGAGCCGCGCTCGCTCCGGCGAGGCGGTGGGCGAAGAGCGTCGGGTAGTGAAGCGCCTCCAGTGGCTGCTACACCTTCTTCGACAGATGATATTCCGCCATCGACGGAACCTGGCGACGGCGACGACATGGATGAGGACCATCCGACCTTTGTATGGGGGACGAATATCAGTGTTGATGATGTAAAGGGGGCTATTATTCGGTTTTTAAGGCATTTCCGTGAGCGTCAGGCGTCGCAGTCTGAAGGCGATTTTCATACTGAGGGGAAATACGCGGAGGTAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATTTGTTCAATTACGATACGGATTTATACACGAAGATGGTGAGGTACCCTCTCGAGGTTCTCGCTATTTTTGATATCGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAGCACATTCAAACTCGGATATTCAATCTCAAAACTTCTACTTCAATGAGAAATCTTAACCCATCTGGTAATGTTTCATTGTTTCCAACATTCAATTTCATTGTTTTAGTTTTTGATAGTTGTCTCCAGTCCTTTCAATTACTGAAGACTAATAACAATTGGTTTTTTTTATTAGACATTGAGAGGATGGTATCACTGAAGGGAATGATTATAAGGTGTAGTTCAATAATTCCTGAGATCAGGGAGGCGATATTTAGATGTCTCGTATGTGGATACTACACTGACCCCGTATCTATCGAGAGAGGACGAATAACTGAGCCTACTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAACTCCATGGCATTGGTTCACAATCGATGCAGGTTTGCTGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACGCCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGACCAACCCAGAGAACTGTAAAATCATTGTTCAAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGATAAGTCAAGAATGGTGGCAGAAGACCTAACTGATGCTGAGAACCGGTTGGGTGGAAATGTGGATGATCTCCAATTTGATGAAGCGAAGGTGGAAGAATTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTGACCAGGTCATTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGTCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTCACCAAAGATCCTGAAACAGGCGAAACAGTACTAGAGAGTGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAGCAACAAACTGTTTCAATAGCAAAGGCTGGAATTATTGCTTCCCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGCCTATCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTGTCAAGGTTTGACTTGATTTATCTAATCCTAGATAAAGCTGACGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTTTCACTGCACTTTGACAACCCAGAGTGTCTTGTTCATCATCCAGTTGCATTCTTCAACTTGCAGGGCATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAACATTCACCCAAAATTGTCAGACGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTCAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTACATTTATTCAAACACATTCGAATGCGAGGAAATCTGATCATTGTTGCTGAAACTATAACTCCCGTTGTAGTGATGGGGAGAGAGGGAGAGACGGGTTTCTACTTTTCTGTCATCACAGCTACCCCCAGACAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTCGAAAAGGGCGACGTTCTTGAATCATTCCGGCTTCTAGAAGTTGCAATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATCTGATCACCACGGGAGTATCAGCCAGTGAAAGGATGCGAAGGGAGAGTTTATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTTGGAGGACCCTCCATGCGCCTGGCAGAGTTGCTGGATGAGCTGAAGAAGAAGAATCCTGATAATGAAGTCCATCTCAACAACCTTAGAAATGCGGTATCAACACTTGCAAGTGAGGGATTTGTAACAATCCATGGTGATAGCATAAAGAGAATATGA 2796 45.24 MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEIATPPRQRSRMVSSETTPAAKEPRSLRRGGGRRASGSEAPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRERQASQSEGDFHTEGKYAEVIKRVLEIEGDSLDVDAQDLFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTSMRNLNPSGNVSLFPTFNFIVLVFDSCLQSFQLLKTNNNWFFLLDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVSIERGRITEPTICLKEECQARNSMALVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMVAEDLTDAENRLGGNVDDLQFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPECLVHHPVAFFNLQGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVHLFKHIRMRGNLIIVAETITPVVVMGREGETGFYFSVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLSATRNIIMEKMQLGGPSMRLAELLDELKKKNPDNEVHLNNLRNAVSTLASEGFVTIHGDSIKRI 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19722511 19727950 - Lsi11G011290.1 Lsi11g01129 674296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01129 931 SUPERFAMILY Nucleic acid-binding proteins 279 422 IPR012340 -
Lsi11g01129 931 MobiDBLite consensus disorder prediction 1 121 - -
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 527 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 624 636 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 600 613 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 572 586 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 651 659 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 CDD MCM4 474 833 - -
Lsi11g01129 931 MobiDBLite consensus disorder prediction 46 69 - -
Lsi11g01129 931 Pfam MCM AAA-lid domain 710 833 IPR041562 -
Lsi11g01129 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 92 242 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 ProSitePatterns MCM family signature. 580 588 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lsi11g01129 931 ProSiteProfiles MCM family domain profile. 471 677 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 SMART mcm 278 835 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 Gene3D - 125 230 - -
Lsi11g01129 931 Gene3D - 279 411 IPR012340 -
Lsi11g01129 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 279 930 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 Gene3D - 449 839 IPR027417 -
Lsi11g01129 931 Pfam MCM P-loop domain 459 681 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 294 307 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 835 844 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 345 357 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 487 498 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 633 650 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi11g01129 931 Pfam MCM N-terminal domain 134 226 IPR027925 -
Lsi11g01129 931 SUPERFAMILY Nucleic acid-binding proteins 152 242 IPR012340 -
Lsi11g01129 931 Pfam MCM OB domain 279 401 IPR033762 -
Lsi11g01129 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 279 930 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 Gene3D - 299 351 - -
Lsi11g01129 931 Gene3D - 840 922 IPR036388 -
Lsi11g01129 931 MobiDBLite consensus disorder prediction 1 34 - -
Lsi11g01129 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 92 242 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi11g01129 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 847 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02475 Lsi-Chr2:31241043 Lsi11g01129 Lsi-Chr11:19722511 1.08E-106 dispersed
Lsi03g02053 Lsi-Chr3:31857777 Lsi11g01129 Lsi-Chr11:19722511 9.19E-78 dispersed
Lsi11g01129 Lsi-Chr11:19722511 Lsi11g00378 Lsi-Chr11:3882467 4.18E-86 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01129 K02212 - csv:101211850 1522.29