Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01133 TTTCTAAATCCTTTTTCTTTGTTCTTCTTCTTCTTTTCTCTTCTTCTCTTTATCACTTTTTTACAAAATTTACACCGTAAAATTTGCTATCCACCTGGTCCCAACGGATTCCCCATCATCGGCAACATGCTGATGATGAACAAACTCACCCACCGTGGCCTCGCCCATCTCGCCACCATCTACGGTGGCCTCTTCCACCTCCGTCTCGGCGTCCTCCACATGGTAGTCGTCTCCACGCCAAACATGGCACGAGAATTCCTCCAAGTTCAAGACATCGCCTTTGCAAATAGGCCTGCAAACGTCGCGATCACTTATCTCACCTACGACCGTGCCGATATGGCCTTTGCCAATTACGGCCCATTTTGGCGCCAAATGCGAAAGATTTGCGTTATCAAACTCTTCAGCCGCCGACGCGCCGAGTCATGGGCGTCGGTCCGTGACGAAGTCGACGCCCTAATTCAAATGGTTTCAAGCAAAATCCGGCAACCGGTGAATATCGGTGACCTAGTTTTCAGCTTGACACGAAACATAACATATAAGGCAGCGTTTGGATCGAACTCGCACGAAGGACAAGACGAGTTCGTTAAGATCTTACAAGAATTTTCTAAATTGTTTGGAGCTTTTAATATTGCAGATTTTTTGCCATGGTTGGGATGGATTCATGCTCGAGATTTCAATGAAAGAATGGGAAAAGCTAGAAGAGATCTTGATGTGTTCATAGATAGCATAATTGATGAACATTTAGAAAAGAAAATGAAGAAATTAAAGGGAAAAAATGAAGATGAAGAAGAAGAAGATTCAGATATGGTTGATGAATTAATGGCATTCCTTGCTGATGAGTCAAGTAACAAAGAGTTTGATGATTCACAATCAGTTCTTAAGCTCACTAGAGACAATATCAAAGCCATCATCATGGATGTAATGTTCGGCGGAACGGAAACAGTAGCTTCAGTGATAGAATGGGCAATAGTAGCTTCAGTGATAGAATGGGCAATGGCGGAGTTAATGAAAAATCCCGAGGAGCTCAATAAGGTACAACAAGAACTCACACTGATCGTTGGATTAGATCGGACGGTCCACGAACCGGACCTCGAAAATCTCCCCTACTTAAAATTTGCCGTCAAAGAAACGCTCCGCCTTCATCCGCCGATTCCGCTGCTCCTCCACGAGACTGCCGCCGACACTTCCGTCGCCGGCTACTTCATTCCGACCGGTTCAAGAGTCTGGATCAACGCCTGGGCGATCGGCCGAGACCGAACCGCTTGGGAAGAACCGGACCGTTTCTGGCCAGGGAGGTTTCAAAACGACGCCGCTCCGGATTTCAAAGGGAGCGATTTCGAGTTCATCCCGTTCGGGTCGGGTCGAAGATCTTGCCCCGGAATGCAACTCGGACTGTATGCTTGTGAGATGGCGGTTGCGAATCTTGTTCATTGCTTTTCGTGGAAATTACCGGACGGAATGAAGGTCGATGAGCTCGATATGAACGACTCGTTCGGACTCACTGCTCCGAGAGCGATTCGACTCGTTGCCGTACCGAGTTTTCGCCTTAACTCGCCTGAGTTCGAACTCGAAGGGAAGAGACGGGAAGATGTATAA 1596 47.18 FLNPFSLFFFFFSLLLFITFLQNLHRKICYPPGPNGFPIIGNMLMMNKLTHRGLAHLATIYGGLFHLRLGVLHMVVVSTPNMAREFLQVQDIAFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRRAESWASVRDEVDALIQMVSSKIRQPVNIGDLVFSLTRNITYKAAFGSNSHEGQDEFVKILQEFSKLFGAFNIADFLPWLGWIHARDFNERMGKARRDLDVFIDSIIDEHLEKKMKKLKGKNEDEEEEDSDMVDELMAFLADESSNKEFDDSQSVLKLTRDNIKAIIMDVMFGGTETVASVIEWAIVASVIEWAMAELMKNPEELNKVQQELTLIVGLDRTVHEPDLENLPYLKFAVKETLRLHPPIPLLLHETAADTSVAGYFIPTGSRVWINAWAIGRDRTAWEEPDRFWPGRFQNDAAPDFKGSDFEFIPFGSGRRSCPGMQLGLYACEMAVANLVHCFSWKLPDGMKVDELDMNDSFGLTAPRAIRLVAVPSFRLNSPEFELEGKRREDV 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19797173 19800876 - Lsi11G011330.1 Lsi11g01133 674300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01133 531 Pfam Cytochrome P450 31 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 Coils Coil 245 272 - -
Lsi11g01133 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Lsi11g01133 531 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 324 520 - -
Lsi11g01133 531 PANTHER CYTOCHROME P450 84A1-RELATED 7 323 - -
Lsi11g01133 531 PANTHER CYTOCHROME P450 84A1-RELATED 324 520 - -
Lsi11g01133 531 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 7 323 - -
Lsi11g01133 531 Gene3D Cytochrome P450 25 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 SUPERFAMILY Cytochrome P450 31 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01133 531 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00622 Lsi-Chr1:5002931 Lsi11g01133 Lsi-Chr11:19797173 2.96E-116 dispersed
Lsi11g01133 Lsi-Chr11:19797173 Lsi01g00720 Lsi-Chr1:5716302 4.28E-129 dispersed
Lsi11g01133 Lsi-Chr11:19797173 Lsi07g00225 Lsi-Chr7:2443353 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01133 K09755 - csv:101217850 881.708