Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01134 ATGGGGGCTTCGATAACGTCCTCTCACTCTCACTCTCTTCTTCTCCGGTCAGTTCCCTCTTCTTTATCCACCTTCTTCTCTAAACCCTCCGCCGCCGCCATCTCCACCGTTTGCTTCCATCAATTTAAACCCAACAGTTCAAACTTCCTCACTCGCGAATCTCCTCACCATTCCCGGTCTTTCACTTCCTCCGCATCCCTTTCCTTCTCTCGCTCCTTTTCCTCCACCATTTCCGGTCCCTCGGAGGTCATATTTGATGAAGAAGACGATGAAATTGATTACGAAGATGAAGTTGAAATCGAAGATTTCGAACGGGAAGAGGCCGTTGGGGATGGAACGGAAACTGGTGTGGCTTCGGAGTTGTCTTCATCAATGGCGAATAGAAATGAAGTGAAGAATATTCCGAGCTTGACGATTAAGGAGAAGAAAGAGCTGGCATCGTATGCTCATAGCTTGGGGAAGAAGCTGAAAAGTCAGTTGGTGGGAAAGTCTGGCGTCACTCCTGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGATCAAAATTCTTGGAAACTGTCCAGAGGAACTGGAGGATGTGGTGAGGAAATTGGAGGAATCAACTGGCTCTGTGGTGGTGAATCAAATTGGCAGAACTGTTATTATTTATAGGCCCAGCATCACAAAAATGAAAGCAGAGGAAGAAAAAAGACGAGCCCGAAAAATTTATGTGAGAAAAGAGCCCGATCGAGTCAAATCCATTTTGCAGAATAAAATACAAACACCCCAGAGCTCGAACCGTGGTCGTCGTGGAAGCAGTAGGTATTGA 825 46.55 MGASITSSHSHSLLLRSVPSSLSTFFSKPSAAAISTVCFHQFKPNSSNFLTRESPHHSRSFTSSASLSFSRSFSSTISGPSEVIFDEEDDEIDYEDEVEIEDFEREEAVGDGTETGVASELSSSMANRNEVKNIPSLTIKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEELEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAEEEKRRARKIYVRKEPDRVKSILQNKIQTPQSSNRGRRGSSRY 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19803691 19806585 - Lsi11G011340.1 Lsi11g01134 674301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01134 274 SUPERFAMILY YhbY-like 136 225 IPR035920 -
Lsi11g01134 274 MobiDBLite consensus disorder prediction 253 274 - -
Lsi11g01134 274 ProSiteProfiles CRM domain profile. 135 234 IPR001890 GO:0003723
Lsi11g01134 274 PANTHER CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED 4 273 - -
Lsi11g01134 274 Pfam CRS1 / YhbY (CRM) domain 137 223 IPR001890 GO:0003723
Lsi11g01134 274 SMART CRS1_YhbY_2 137 223 IPR001890 GO:0003723
Lsi11g01134 274 Gene3D - 136 236 IPR035920 -
Lsi11g01134 274 PANTHER CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED 4 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01134 K07574 yhbY; RNA-binding protein - csv:101213060 369.777
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g22 . . . . . . . . . . . . . . . Cpe04g00105 . . . . . . . . Cla02g00490 Cam02g0499 Cec02g0500 Cco02g0506 Clacu02g0503 Cmu02g0499 Cre02g0831 . Cone8ag1226 . . . Csa07g00029 . Cme01g01351 . . Bda15g01072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01134 . Chy01g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010229 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01134 Lsi_Chr11 FPKM 0.658527 0.834489 0.551334 0.423755 6.0306 5.337813 5.490108 0.0 0.0 0.098034