Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01136 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGATGTGATCTCCATGTTCATCGTGCTAATAAACTTGCTGGAAAACACTCGAGATTCTCTTTACTTCATCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTAGTATTCTGTCAACAAGATAGGGCAATTCTTTGTAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACAGGTGTGAAGCTTTCTTCGACTTGTTATTCGTATCAAACATCTTCGTCCTCCAATGGCTGCGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCCGCGAATGAAATCTCGAGCTCTCATTCAGCTGAAAAACCTACTCCATCGACAAGTAATTACAAGGTTGAAGACGGCCAAGGAAGCGACGGCGGTTCGCTCTCGACAAGCAGCATATCGGAATATTTGGAAACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGGTTTGCAGTACACCCTCGGTGTAG 645 46.2 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSYQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKPTPSTSNYKVEDGQGSDGGSLSTSSISEYLETLPGWCVEEFLDPSAAANRFCKVCSTPSV 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19836786 19838460 - Lsi11G011360.1 Lsi11g01136 674303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01136 214 MobiDBLite consensus disorder prediction 144 177 - -
Lsi11g01136 214 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 208 - -
Lsi11g01136 214 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lsi11g01136 214 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Lsi11g01136 214 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Lsi11g01136 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 208 - -
Lsi11g01136 214 CDD Bbox1_BBX-like 5 47 - -
Lsi11g01136 214 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi11g01136 214 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lsi11g01136 214 CDD Bbox1_BBX-like 58 100 - -
Lsi11g01136 214 Gene3D Classic Zinc Finger 1 100 - -
Lsi11g01136 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00813 Lsi-Chr3:12276586 Lsi11g01136 Lsi-Chr11:19836786 5.94E-45 dispersed
Lsi11g01136 Lsi-Chr11:19836786 Lsi06g01109 Lsi-Chr6:21349276 2.89E-15 dispersed
Lsi10g00420 Lsi-Chr10:6364840 Lsi11g01136 Lsi-Chr11:19836786 4.90E-13 wgd
Lsi10g00408 Lsi-Chr10:6209617 Lsi11g01136 Lsi-Chr11:19836786 1.04E-65 wgd
Lsi11g01136 Lsi-Chr11:19836786 Lsi08g01348 Lsi-Chr8:21779307 8.27E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26188 PF00643 zf-B_box 2.30E-07 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01136 - - bhj:120077848 389.037