Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01136 | ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGATGTGATCTCCATGTTCATCGTGCTAATAAACTTGCTGGAAAACACTCGAGATTCTCTTTACTTCATCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTAGTATTCTGTCAACAAGATAGGGCAATTCTTTGTAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACAGGTGTGAAGCTTTCTTCGACTTGTTATTCGTATCAAACATCTTCGTCCTCCAATGGCTGCGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCCGCGAATGAAATCTCGAGCTCTCATTCAGCTGAAAAACCTACTCCATCGACAAGTAATTACAAGGTTGAAGACGGCCAAGGAAGCGACGGCGGTTCGCTCTCGACAAGCAGCATATCGGAATATTTGGAAACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGGTTTGCAGTACACCCTCGGTGTAG | 645 | 46.2 | MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSYQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKPTPSTSNYKVEDGQGSDGGSLSTSSISEYLETLPGWCVEEFLDPSAAANRFCKVCSTPSV | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19836786 | 19838460 | - | Lsi11G011360.1 | Lsi11g01136 | 674303 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01136 | 214 | MobiDBLite | consensus disorder prediction | 144 | 177 | - | - | |
Lsi11g01136 | 214 | PANTHER | B-BOX ZINC FINGER PROTEIN 20 | 1 | 208 | - | - | |
Lsi11g01136 | 214 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
Lsi11g01136 | 214 | Pfam | B-box zinc finger | 3 | 44 | IPR000315 | GO:0008270 | |
Lsi11g01136 | 214 | Pfam | B-box zinc finger | 55 | 92 | IPR000315 | GO:0008270 | |
Lsi11g01136 | 214 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 208 | - | - | |
Lsi11g01136 | 214 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Lsi11g01136 | 214 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Lsi11g01136 | 214 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
Lsi11g01136 | 214 | CDD | Bbox1_BBX-like | 58 | 100 | - | - | |
Lsi11g01136 | 214 | Gene3D | Classic Zinc Finger | 1 | 100 | - | - | |
Lsi11g01136 | 214 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00813 | Lsi-Chr3:12276586 | Lsi11g01136 | Lsi-Chr11:19836786 | 5.94E-45 | dispersed | |
Lsi11g01136 | Lsi-Chr11:19836786 | Lsi06g01109 | Lsi-Chr6:21349276 | 2.89E-15 | dispersed | |
Lsi10g00420 | Lsi-Chr10:6364840 | Lsi11g01136 | Lsi-Chr11:19836786 | 4.90E-13 | wgd | |
Lsi10g00408 | Lsi-Chr10:6209617 | Lsi11g01136 | Lsi-Chr11:19836786 | 1.04E-65 | wgd | |
Lsi11g01136 | Lsi-Chr11:19836786 | Lsi08g01348 | Lsi-Chr8:21779307 | 8.27E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26188 | PF00643 | zf-B_box | 2.30E-07 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01136 | - | - | bhj:120077848 | 389.037 |