Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01136 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGATGTGATCTCCATGTTCATCGTGCTAATAAACTTGCTGGAAAACACTCGAGATTCTCTTTACTTCATCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTAGTATTCTGTCAACAAGATAGGGCAATTCTTTGTAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACAGGTGTGAAGCTTTCTTCGACTTGTTATTCGTATCAAACATCTTCGTCCTCCAATGGCTGCGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCCGCGAATGAAATCTCGAGCTCTCATTCAGCTGAAAAACCTACTCCATCGACAAGTAATTACAAGGTTGAAGACGGCCAAGGAAGCGACGGCGGTTCGCTCTCGACAAGCAGCATATCGGAATATTTGGAAACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGGTTTGCAGTACACCCTCGGTGTAG 645 46.2 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSYQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKPTPSTSNYKVEDGQGSDGGSLSTSSISEYLETLPGWCVEEFLDPSAAANRFCKVCSTPSV 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19836786 19838460 - Lsi11G011360.1 Lsi11g01136 674303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01136 214 MobiDBLite consensus disorder prediction 144 177 - -
Lsi11g01136 214 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 208 - -
Lsi11g01136 214 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lsi11g01136 214 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Lsi11g01136 214 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Lsi11g01136 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 208 - -
Lsi11g01136 214 CDD Bbox1_BBX-like 5 47 - -
Lsi11g01136 214 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi11g01136 214 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lsi11g01136 214 CDD Bbox1_BBX-like 58 100 - -
Lsi11g01136 214 Gene3D Classic Zinc Finger 1 100 - -
Lsi11g01136 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01136 - - - bhj:120077848 389.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00813 Lsi-Chr3:12276586 Lsi11g01136 Lsi-Chr11:19836786 5.94E-45 dispersed
Lsi11g01136 Lsi-Chr11:19836786 Lsi06g01109 Lsi-Chr6:21349276 2.89E-15 dispersed
Lsi10g00420 Lsi-Chr10:6364840 Lsi11g01136 Lsi-Chr11:19836786 4.90E-13 wgd
Lsi10g00408 Lsi-Chr10:6209617 Lsi11g01136 Lsi-Chr11:19836786 1.04E-65 wgd
Lsi11g01136 Lsi-Chr11:19836786 Lsi08g01348 Lsi-Chr8:21779307 8.27E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01266 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.3 6.0e-81 298.1
Lsi06g01109 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.1e-55 214.2
Lsi06g01109 CCT 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.9 7.0e-66 248.1
Lsi08g01266 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.3 4.3e-55 212.2
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 2.3e-91 332.8
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 4.7e-89 325.1
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi11g01136 . 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 55.0 5.4e-52 201.8
Lsi07g00290 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 6.1e-77 284.6
Lsi07g00267 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 7.1e-56 213.8
Lsi01g00620 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.5e-50 194.5
Lsi07g00267 CCT,ECH 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 1.1e-57 219.9
Lsi01g00620 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.4e-49 193.0
Lsi11g01136 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.7e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26188 PF00643 zf-B_box 2.30E-07 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01136 Lsi_Chr11 FPKM 7.287916 8.215139 3.606144 2.859392 2.967571 4.247163 3.902743 0.798077 0.519734 0.432398