Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01139 ATGGGGGCGGTTGCTGGAGAGGAGTTGATGAAGTTGGAGAAAATGCAGGGGATAAATGCTCGTGAAGAGAAAATTCTTGTTTTAGTAAGGTTGAGACCCTTGAATGAGAAGGAGATTTTGATGAATGAAGCAGCAGATTGGGAATGCATCAATGATACTAGTATCTTGTACCGGAATACCTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTCGAGGTGATTGCTCTACAAAGCAGGTGTACGAGGAAGGAGCCAGAGACATTGCATTTTCTGTAGTCAGTGGTATCAACTCAAGTATTTTTGCATATGGTCAGACAAGCAGTGGAAAGACATACACCATGAATGGAATTCTTGAATATTCAGTGGCAGATATATTTGATTACATTAGAAGGCATGAAGAAAGAGCATTCATTGTGAAGTTTTCAGCTATTGAGATATACAATGAAGCTGTTAGAGACCTCCTGAGCACAGATACTAGTCCTCTCAGGCTGCTAGATGACCAGGAGCGAGGGACGATTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAGGGAGCTCATTTCAATTTGTGAAGCTCAACGACGGATTGGAGAGACCTCACTGAATGAGAAAAGTTCTAGATCTCATCAAATTATAAAACTGACAATTGAAAGTTCTGCTCGAGAGTTTTTAGGAAAAGACAATTCAACCACACTTGCTGCGAGTGTGAGTTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTATCAGCAGGGGCGAGACTGAAAGAAGGATGTCACATAAATCGCAGTTTATTGACTCTGGGTACTGTTATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACACGAATATTGCAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCATCATCTGTACATTGAGCCCTGCAAGAAGTCACGTTGAGCAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCAAAAGAGGTGACAACAAAAGCACAAGTCAACGTTGTCATGTCTGATAAGGCTTTGGTTAAGCATTTGCAGAAAGAGTTAGCGAGATTGGAGAGTGAGTTGAGAACTCCTGCCCCTGTTTCATCCAGTTCTGAATATGCAGCCCTACTTAAAAAGAAAGATCTTCAAATTGAGAAGATGGCGAAGGAGATTAGAGAACTCACTAAGCAAAGGGATCTCGCTCAATCCCGAGTTGAAGATTTACTTCGTATGGTTGGACATGATGATGTCTCGAGAAAGGATATCAAAACTAGTTATTCCAAATTGCAAGCAAGGGATGGTTTAGAGTATGAAGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGGTAGAGATTTGGGTGGAAAATCCTTTAACAATCCTCATTATTATGATGGAGACAGTGATGATGGAAAGAGGTTCCTTGACTCTCACTCAGGTCAAAGTGGAATAACAACCGCTCTTGCAATAGCAGAAGATTCCGATGACTGCAAGGAAGTTCAGTGTATTGAAATGGGGGAGTCAGTCAGGGACGATGCCTTGTCAACGCTTGCTGCTAACAATGGTGAATTTAGAGGAACACCTTTTACTGGGTCAAACGATGGAAATATAATGGGTCATGAATTGATATCAACCCCTGTGAATGGGAACAGAGAAGCACATCAGATTCAAAATAATTCAACAAATGGTCAAGCAGAGCAAAGACTCCATGATGTAAGAAGGATGGACATTAATTCTATGAGTAGTCCTTACCGCGACGATGCATGTTCAAAGGTTCCTGCTGACATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAACTTCACGACTGAGTTATCTCCTGATAGAGGAGAGACCACCCCCCCTCATGGATTTGACAAAAGCTTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCCCACAAATAGACTTTGATGGCGGCCTCGTGAGACTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCTGCAGATGAAGACGTTACTCGCTTAGACGCCTTTGTTGCTGGATTGAAGAAAATGAGAAACTCGGAATTGCACAGTTTCCTAGATAATCTAAGTTCCTATAATTTCTTGCGGATGGGCAAACCTATGGTGTGTGCTTTAGAACTCGGCTTGAATACTAGGTCTCCCTTGAAGTCTATCTTTGTTATAAAGGGACAGTCTGAGCACTTCATCAACGCATTTTTGGCCTATGCCTCTTGCGTTAATCCCACACTTTGCTTGATGACATTGATAGCAAGTGAGACATTGCAGGATGGATTAGTCGCATCAGATTGGAAGGAAGAATTTCAGAGGCAGCAGAGGATGATAATTGAGCTTTGGCAGACTTGCAACGTCTCGATTGTCCACAGAACTTACTTTTTCTTGCTCTTCCAAGGCGATCCTGCCGATTCCATTTACATGGAAGTAGAGCTCAGGAGGCTGAGTTTTCTAAAGCAAACATTTTATTACGGTAATGCAGCTATGGATGATGGCCGGAAAGTCTCTTTTTCTTCAAGGTTAGTCCTCGCTCTAGCATGTTCTATCTTTGATTTCTATCTTCATACAATGTGTTCACAGACAAAAAGTAATTTATGGCAGACTGCAACCGACGACCTAAGTATAAAACTGCCTTTTCAACTAGTACAAATATTGCCCAATACGAGGGATCTTCGTCGTGAGAGAGAAACATTAAGTAAGCTAATGCAGAAGCGATTCTCAGAAGATGAAAGAAAGAGGTTGTTCCAGAAGTGGGGAATTGCGTTGAATTCGAAACGTCGAAGGCTGCAGCTGATCAACCAGTTGTGGAGCAATCCAAAGAACATGAACCATGTAACAGAGAGTGCAGCCATTGTTGCCAAGCTTGTGAAGTTTGCTGAGCAAGGACAGGCCCTCAAGGGAAACTTTGGTCTCAGCTTCATTACACCTCCACAGAAAAGTAGATCATTTAGCTGGAGAAACAATAGGACTTCTCTTCTGTGA 3066 42.43 MGAVAGEELMKLEKMQGINAREEKILVLVRLRPLNEKEILMNEAADWECINDTSILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGARDIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEYSVADIFDYIRRHEERAFIVKFSAIEIYNEAVRDLLSTDTSPLRLLDDQERGTIVEKVTEETLRDWNHLRELISICEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVSFIDLAGSERAAQALSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRTPAPVSSSSEYAALLKKKDLQIEKMAKEIRELTKQRDLAQSRVEDLLRMVGHDDVSRKDIKTSYSKLQARDGLEYEGSPSETSSVADFRGRDLGGKSFNNPHYYDGDSDDGKRFLDSHSGQSGITTALAIAEDSDDCKEVQCIEMGESVRDDALSTLAANNGEFRGTPFTGSNDGNIMGHELISTPVNGNREAHQIQNNSTNGQAEQRLHDVRRMDINSMSSPYRDDACSKVPADMSSSRSLKLARSWSCRANFTTELSPDRGETTPPHGFDKSFPGRPEGFERKLPQIDFDGGLVRLDSQSSIGSARSIKTSADEDVTRLDAFVAGLKKMRNSELHSFLDNLSSYNFLRMGKPMVCALELGLNTRSPLKSIFVIKGQSEHFINAFLAYASCVNPTLCLMTLIASETLQDGLVASDWKEEFQRQQRMIIELWQTCNVSIVHRTYFFLLFQGDPADSIYMEVELRRLSFLKQTFYYGNAAMDDGRKVSFSSRLVLALACSIFDFYLHTMCSQTKSNLWQTATDDLSIKLPFQLVQILPNTRDLRRERETLSKLMQKRFSEDERKRLFQKWGIALNSKRRRLQLINQLWSNPKNMNHVTESAAIVAKLVKFAEQGQALKGNFGLSFITPPQKSRSFSWRNNRTSLL 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19905923 19913818 + Lsi11G011390.1 Lsi11g01139 674306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01139 1021 Gene3D Kinesin motor domain 16 377 IPR036961 -
Lsi11g01139 1021 MobiDBLite consensus disorder prediction 448 495 - -
Lsi11g01139 1021 PANTHER KINESIN-LIKE PROTEIN KIN-7F 915 1021 - -
Lsi11g01139 1021 Coils Coil 355 375 - -
Lsi11g01139 1021 Pfam Domain of unknown function (DUF3490) 915 1003 IPR021881 -
Lsi11g01139 1021 Pfam Domain of unknown function (DUF3490) 797 867 IPR021881 -
Lsi11g01139 1021 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lsi11g01139 1021 CDD KISc_CENP_E 24 346 - -
Lsi11g01139 1021 Coils Coil 392 426 - -
Lsi11g01139 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 378 IPR027417 -
Lsi11g01139 1021 MobiDBLite consensus disorder prediction 634 656 - -
Lsi11g01139 1021 PANTHER KINESIN-LIKE PROTEIN KIN-7F 6 717 - -
Lsi11g01139 1021 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi11g01139 1021 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi11g01139 1021 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi11g01139 1021 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi11g01139 1021 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi11g01139 1021 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi11g01139 1021 PANTHER CENTROMERE PROTEIN E 778 868 - -
Lsi11g01139 1021 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi11g01139 1021 PANTHER CENTROMERE PROTEIN E 6 717 - -
Lsi11g01139 1021 PANTHER KINESIN-LIKE PROTEIN KIN-7F 778 868 - -
Lsi11g01139 1021 PANTHER CENTROMERE PROTEIN E 915 1021 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01139 K11498 CENPE; centromeric protein E - csv:101213783 1631.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00269 Lsi-Chr7:2934691 Lsi11g01139 Lsi-Chr11:19905923 0 dispersed
Lsi08g01346 Lsi-Chr8:21749524 Lsi11g01139 Lsi-Chr11:19905923 3.85E-14 dispersed
Lsi10g00409 Lsi-Chr10:6214377 Lsi11g01139 Lsi-Chr11:19905923 5.50E-74 dispersed
Lsi11g00112 Lsi-Chr11:1222600 Lsi11g01139 Lsi-Chr11:19905923 8.92E-15 dispersed
Lsi11g01139 Lsi-Chr11:19905923 Lsi03g01877 Lsi-Chr3:30179387 7.47E-55 dispersed
Lsi11g01135 Lsi-Chr11:19823003 Lsi11g01139 Lsi-Chr11:19905923 7.55E-76 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01139 Lsi_Chr11 FPKM 56.558578 58.899612 594.912964 594.196716 61.977623 49.18272 61.021877 571.28894 571.77832 611.018616